Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005828.1

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

46464 .. 47654

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005828.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgaagtcgccgaagttgtattttccggccgggtccgaaaacaccaacctgcaccgccttctaccgccgctaccaccaagaatcggggctagagaacaccacagggaccaccagacggcggagacgatcccgtctggaaagtttcttcgctggagatggtcggagctcgccggaaaagtcgggtcggatcaatcgggtccgggtcggagagtaccgagaatgaagccctatcgtaagaaaggcttggaccattatgaaactttaggggaaatattcaatactactactgcaacaggtcaactacaatatgcctctagccagctccctcccaattcagattatgagtgtgagttagagaacaagtttcttaacaatggagttcacatcaatcttgatgaggatttcaatgttaataatactcaaaatgagatcagagggaaaagaaaagctgtgatagaggcttttccttcagagggtcgaacaaaaaaaatgggacaaaatggaagcctacttagaaatttgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

175

Amino Acids

19.94

Weight (kDa)

9.64

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	57
AciI	CCGC	4 cut(s)	55, 65, 68, 119
AclWI	GGATC	2 cut(s)	121, 195
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	83, 115, 118, 473
AgsI	TTSAA	2 cut(s)	277, 406
AluBI	AGCT	3 cut(s)	166, 322, 449
AluI	AGCT	3 cut(s)	166, 322, 449
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	121, 195
AoxI	GGCC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	517
AspS9I	GGNCC	4 cut(s)	33, 106, 197, 247
AsuC2I	CCSGG	2 cut(s)	31, 201
AvaII	GGWCC	4 cut(s)	33, 106, 197, 247
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	31, 201
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	90, 315
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	31, 201
Bme18I	GGWCC	4 cut(s)	33, 106, 197, 247
BmgT120I	GGNCC	4 cut(s)	33, 106, 197, 247
BmiI	GGNNCC	3 cut(s)	34, 107, 198
BmrFI	CCNGG	2 cut(s)	31, 201
BpmI	CTGGAG	1 cut(s)	172
BpuMI	CCSGG	2 cut(s)	31, 201
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 115, 118, 473
BseLI	CCNNNNNNNGG	4 cut(s)	83, 115, 118, 473
BseX3I	CGGCCG	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	26, 30, 171, 200
BslFI	GGGAC	2 cut(s)	119, 507
BslI	CCNNNNNNNGG	4 cut(s)	83, 115, 118, 473
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	2 cut(s)	119, 507
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	126, 187, 429
BspACI	CCGC	4 cut(s)	55, 65, 68, 119
BspANI	GGCC	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	34, 107, 198
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	121, 195
BssMI	GATC	3 cut(s)	126, 187, 429
BstC8I	GCNNGC	2 cut(s)	168, 320
BstDEI	CTNAG	1 cut(s)	512
BstKTI	GATC	3 cut(s)	129, 190, 432
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	126, 187, 429
BstMCI	CGRYCG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	29, 199
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	168, 320
Cfr13I	GGNCC	4 cut(s)	33, 106, 197, 247
Csp6I	GTAC	1 cut(s)	212
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	3 cut(s)	128, 189, 431
DpnII	GATC	3 cut(s)	126, 187, 429
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	4 cut(s)	33, 106, 197, 247
Eco52I	CGGCCG	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	116
FaiI	YATR	3 cut(s)	255, 309, 342
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	2 cut(s)	119, 507
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	2 cut(s)	90, 315
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	4 cut(s)	26, 30, 171, 200
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	4 cut(s)	26, 30, 171, 200
Hpy166II	GTNNAC	2 cut(s)	299, 382
Hpy188I	TCNGA	7 cut(s)	37, 163, 187, 207, 337, 434, 472
Hpy188III	TCNNGA	2 cut(s)	135, 392
Hpy8I	GTNNAC	2 cut(s)	299, 382
HpyAV	CCTTC	2 cut(s)	68, 477
HpyCH4V	TGCA	2 cut(s)	52, 290
HpyF3I	CTNAG	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	126, 187, 429
LmnI	GCTCC	2 cut(s)	163, 327
MaeI	CTAG	2 cut(s)	90, 315
MalI	GATC	3 cut(s)	128, 189, 431
MboI	GATC	3 cut(s)	126, 187, 429
MboII	GAAGA	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	331, 517
MmeI	TCCRAC	3 cut(s)	141, 165, 185
MnlI	CCTC	6 cut(s)	322, 336, 391, 428, 451, 466
MseI	TTAA	2 cut(s)	369, 411
MspI	CCGG	4 cut(s)	26, 30, 171, 200
MspR9I	CCNGG	2 cut(s)	31, 201
NciI	CCSGG	2 cut(s)	31, 201
NdeII	GATC	3 cut(s)	126, 187, 429
NlaIV	GGNNCC	3 cut(s)	34, 107, 198
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	34, 107, 198
PspPI	GGNCC	4 cut(s)	33, 106, 197, 247
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	369, 411
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	126, 187, 429
Sau96I	GGNCC	4 cut(s)	33, 106, 197, 247
ScrFI	CCNGG	2 cut(s)	31, 201
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	5 cut(s)	51, 168, 298, 324, 451
SinI	GGWCC	4 cut(s)	33, 106, 197, 247
Sse9I	AATT	2 cut(s)	331, 517
SsiI	CCGC	4 cut(s)	55, 65, 68, 119
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	2 cut(s)	90, 315
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	29, 199
TaqI	TCGA	1 cut(s)	478
TasI	AATT	2 cut(s)	331, 517
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	369, 411
Tru9I	TTAA	2 cut(s)	369, 411
TspDTI	ATGAA	3 cut(s)	17, 236, 270
VpaK11BI	GGWCC	4 cut(s)	33, 106, 197, 247
XapI	RAATTY	1 cut(s)	517
XspI	CTAG	2 cut(s)	90, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.