Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

6290272 .. 6291198

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G054800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

GACCATTTTATTCATCTATTATATGAAGAGGCAAAAAAAGGCTTGCAAACCAATACTTTAGATAAGAATGAATGGGCTGGGATAAAGAAGAAGTTGTTTGATAAGTTTGGGAAAAGATACAACCGTGACAAATTGAAGCAAAAATATAACCGATTGCGCAAGATTCACGGTGAGTTTGGAAAGCTCATTTCTCAAACTGGGATGGGTTGGGACCCAAACATGAGCACTGTTCAAGCATCTGAAGAAGTTTGGGCATCATATCTCAAGAAAAACAAGTTTGCAAGCCGTTTTCGTAGCAAAGGGTGTCCTCATTATGATATGCTTGATTCTGATGTTCAAAGAGAGCTAGAAAATGATTTTCTTACCACTGGCGCGCACATAGGTCTTAATAGAGAAATTGGTTCAAGAGGCTTTAGTGAGGGAGGTGAAGGAACTAGCAACAAGAACAAGCGTGCTGCTCTATTCCCCCAAAGTGATCTTCCCTCAAGGTCAAAGTCATCCAAGTCCACCAAAATGGATGAAGCCATTGAAGCTTGGGCAAAGTCTCTTAATCCCAAAACTGAAGTTTCATTGGCAAAGCTTAAGCGTAAGGGCGAGAAGGAAGTATCCTCTCCATATAGAGAATTGAGCTCTGTTGAGGATTGTATGGACATATTGGAGGCCATGGAGGGAGTGAATGATGATGCTTATGTGAAAGCTTTAGATGAGTTTACTAATTTGGATTGGAGGAAGATGTTTGTGAAGATGTCGGATCCACGGAGGAGTGGCTCAATAGCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

261

Amino Acids

29.75

Weight (kDa)

9.24

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	158
AccII	CGCG	1 cut(s)	374
AclWI	GGATC	2 cut(s)	746, 759
AcuI	CTGAAG	2 cut(s)	261, 582
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	136, 233, 338, 405, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	6 cut(s)	184, 346, 533, 580, 630, 698
AluI	AGCT	6 cut(s)	184, 346, 533, 580, 630, 698
Alw21I	GWGCWC	2 cut(s)	227, 632
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	746, 759
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	1 cut(s)	455
AspLEI	GCGC	3 cut(s)	159, 374, 376
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	182, 437
AvaII	GGWCC	1 cut(s)	211
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BamHI	GGATCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	227, 632
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	2 cut(s)	347, 435
BfrI	CTTAAG	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	616
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	212, 213, 753
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	3 cut(s)	245, 263, 673
BmuI	ACTGGG	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	248, 469
BsaJI	CCNNGG	2 cut(s)	663, 755
Bse1I	ACTGG	2 cut(s)	202, 373
BseDI	CCNNGG	2 cut(s)	663, 755
BseGI	GGATG	3 cut(s)	207, 497, 523
BseNI	ACTGG	2 cut(s)	202, 373
BsePI	GCGCGC	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	775
BseXI	GCAGC	1 cut(s)	442
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	662
BsiHKAI	GWGCWC	2 cut(s)	227, 632
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	227, 632
Bsp143I	GATC	2 cut(s)	475, 751
Bsp19I	CCATGG	1 cut(s)	663
BspANI	GGCC	1 cut(s)	662
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	3 cut(s)	212, 213, 753
BspPI	GGATC	2 cut(s)	746, 759
BspTI	CTTAAG	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	202, 373
BssECI	CCNNGG	2 cut(s)	663, 755
BssHII	GCGCGC	1 cut(s)	372
BssMI	GATC	2 cut(s)	475, 751
BssT1I	CCWWGG	1 cut(s)	663
Bst4CI	ACNGT	3 cut(s)	125, 170, 229
Bst6I	CTCTTC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	581
BstC8I	GCNNGC	4 cut(s)	44, 283, 374, 453
BstDSI	CCRYGG	2 cut(s)	663, 755
BstF5I	GGATG	3 cut(s)	207, 497, 523
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	3 cut(s)	159, 374, 376
BstKTI	GATC	2 cut(s)	478, 754
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	475, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	751
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	662
BtgI	CCRYGG	2 cut(s)	663, 755
BtsCI	GGATG	3 cut(s)	207, 497, 523
BtsIMutI	CAGTG	2 cut(s)	225, 366
Cac8I	GCNNGC	4 cut(s)	44, 283, 374, 453
CfoI	GCGC	3 cut(s)	159, 374, 376
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	2 cut(s)	220, 664
DpnI	GATC	2 cut(s)	477, 753
DpnII	GATC	2 cut(s)	475, 751
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	630
Eco57I	CTGAAG	2 cut(s)	261, 582
EcoICRI	GAGCTC	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	2 cut(s)	223, 667
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	219, 663
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	3 cut(s)	214, 484, 530
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	2 cut(s)	347, 435
FspI	TGCGCA	1 cut(s)	158
GlaI	GCGC	3 cut(s)	158, 373, 375
GluI	GCNGC	1 cut(s)	456
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	662
HhaI	GCGC	3 cut(s)	159, 374, 376
Hin1II	CATG	2 cut(s)	223, 667
Hin6I	GCGC	3 cut(s)	157, 372, 374
HinP1I	GCGC	3 cut(s)	157, 372, 374
HindIII	AAGCTT	3 cut(s)	531, 578, 696
HinfI	GANTC	2 cut(s)	163, 326
HphI	GGTGA	2 cut(s)	182, 437
Hpy166II	GTNNAC	2 cut(s)	507, 711
Hpy188I	TCNGA	3 cut(s)	241, 331, 751
Hpy188III	TCNNGA	2 cut(s)	265, 405
Hpy8I	GTNNAC	2 cut(s)	507, 711
HpyAV	CCTTC	2 cut(s)	422, 592
HpyCH4III	ACNGT	3 cut(s)	125, 170, 229
HpyCH4V	TGCA	2 cut(s)	46, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
Hsp92II	CATG	2 cut(s)	223, 667
HspAI	GCGC	3 cut(s)	157, 372, 374
KflI	GGGWCCC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	475, 751
LpnPI	CCDG	3 cut(s)	63, 183, 354
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	3 cut(s)	245, 263, 673
MaeI	CTAG	2 cut(s)	347, 435
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	2 cut(s)	477, 753
MboI	GATC	2 cut(s)	475, 751
MboII	GAAGA	6 cut(s)	38, 100, 254, 470, 742, 754
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	2 cut(s)	227, 632
MluCI	AATT	4 cut(s)	131, 396, 623, 715
MmeI	TCCRAC	1 cut(s)	729
MseI	TTAA	3 cut(s)	387, 549, 582
MslI	CAYNNNNRTG	1 cut(s)	512
MspCI	CTTAAG	1 cut(s)	581
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	2 cut(s)	475, 751
NlaIII	CATG	2 cut(s)	223, 667
NlaIV	GGNNCC	3 cut(s)	212, 213, 753
NmuCI	GTSAC	1 cut(s)	125
NsbI	TGCGCA	1 cut(s)	158
PauI	GCGCGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	163, 326
PkrI	GCNGC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	212, 213, 753
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	751
PteI	GCGCGC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	632
SaqAI	TTAA	3 cut(s)	387, 549, 582
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	475, 751
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	227, 632
SetI	ASST	9 cut(s)	186, 348, 385, 427, 491, 535, 582, 632, 700
SfaNI	GCATC	3 cut(s)	245, 263, 673
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	3 cut(s)	263, 484, 581
SmoI	CTYRAG	3 cut(s)	263, 484, 581
Sse9I	AATT	4 cut(s)	131, 396, 623, 715
SspMI	CTAG	2 cut(s)	347, 435
SstI	GAGCTC	1 cut(s)	632
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	125, 170, 229
TasI	AATT	4 cut(s)	131, 396, 623, 715
TfiI	GAWTC	2 cut(s)	163, 326
Tru1I	TTAA	3 cut(s)	387, 549, 582
Tru9I	TTAA	3 cut(s)	387, 549, 582
TscAI	CASTG	2 cut(s)	232, 373
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	39, 84, 534, 558
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	2 cut(s)	232, 373
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	211
XspI	CTAG	2 cut(s)	347, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.