Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

50829426 .. 50836296

Gene Structure 6871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATGAGAATATGGAACTGCAGCAATTGGAGTTGGTCGAACTAGAAAAGTGGTTTGAAGTTGAATTTGAAGCAAGACCTACAACACTAGAGGCTGAACAAGTATCCTTGCTAGTTGATGAGAATTCGGGACTACAACAATTGGAAGTGGAATGGGAGAAGAATGGAATCGATATTGATTCCGGAGGAATGATTCCTAAACCCATCTCCCCCTTCGTAATCGAATTCCTAAGTATTCGGGAATCGATTCACGATAAGGAGGTGGGACCTACATCCATTCCAATTCATTCATGTGTTAATAAACGCATGAATTCTTTTACCGGAATCATTCCGATTCCTTTATGTGTATGGAGTCTTCCCCTCTTCGAATTTAGTTCAGCCTCTCGTTCTGAATTTTCTTCCATTAATCTTCCTCGGAAACAGACCTTCGTTTGGATTCTACGGCACAAGAGAGTGCCAGGAGTGAAGCCATATCGCAAGAAAGGCTTGGAACATTATGAAATTTTAGGGGAAATATTTAATACTACTACTACAACAGGTCAACTGCATTATGCCTCTAGCCAATTCCCTCCCAATTCAAATGAGGAGCGCGAGTTAGAGAACAATTTTCTTAATAATGGAGTTCACATCAATCTTGATGATGATTTCAAGATTAACAATGCTCAACTGAAACAAAAGGAAAAAGAAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

231

Amino Acids

26.65

Weight (kDa)

5.03

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	591
AccIII	TCCGGA	1 cut(s)	182
AcsI	RAATTY	7 cut(s)	65, 124, 224, 310, 368, 392, 501
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	5 cut(s)	59, 65, 71, 579, 649
AjnI	CCWGG	1 cut(s)	457
Aor13HI	TCCGGA	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	7 cut(s)	65, 124, 224, 310, 368, 392, 501
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	115
BfaI	CTAG	4 cut(s)	44, 89, 113, 558
BfmI	CTRYAG	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	366
Bsa29I	ATCGAT	2 cut(s)	171, 245
BsaJI	CCNNGG	1 cut(s)	413
BsaWI	WCCGGW	2 cut(s)	182, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	459
BseCI	ATCGAT	2 cut(s)	171, 245
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	2 cut(s)	10, 272
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	591
BshVI	ATCGAT	2 cut(s)	171, 245
BsiSI	CCGG	2 cut(s)	183, 321
BslFI	GGGAC	2 cut(s)	144, 279
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	144, 279
Bsp119I	TTCGAA	1 cut(s)	366
Bsp13I	TCCGGA	1 cut(s)	182
BspDI	ATCGAT	2 cut(s)	171, 245
BspEI	TCCGGA	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	459
Bst6I	CTCTTC	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	10, 272
BstFNI	CGCG	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	347
Bsu15I	ATCGAT	2 cut(s)	171, 245
BsuI	GTATCC	1 cut(s)	115
BsuTUI	ATCGAT	2 cut(s)	171, 245
BtsCI	GGATG	2 cut(s)	10, 272
CfoI	GCGC	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	2 cut(s)	171, 245
CviAII	CATG	2 cut(s)	291, 307
CviJI	RGCY	5 cut(s)	95, 380, 469, 486, 561
CviKI_1	RGCY	5 cut(s)	95, 380, 469, 486, 561
DdeI	CTNAG	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRI	GAATTC	3 cut(s)	124, 224, 310
EcoRII	CCWGG	1 cut(s)	457
FaeI	CATG	2 cut(s)	294, 310
FaiI	YATR	8 cut(s)	14, 292, 308, 343, 349, 472, 498, 552
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	144, 279
FatI	CATG	2 cut(s)	290, 306
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	2 cut(s)	17, 259
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	4 cut(s)	44, 89, 113, 558
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	1 cut(s)	23
HapII	CCGG	2 cut(s)	183, 321
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	2 cut(s)	294, 310
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	9 cut(s)	168, 179, 193, 242, 247, 324, 334, 352, 436
HpaII	CCGG	2 cut(s)	183, 321
Hpy166II	GTNNAC	2 cut(s)	542, 625
Hpy188I	TCNGA	3 cut(s)	333, 391, 417
Hpy188III	TCNNGA	6 cut(s)	129, 183, 239, 251, 635, 649
Hpy8I	GTNNAC	2 cut(s)	542, 625
HpyAV	CCTTC	2 cut(s)	223, 436
HpyCH4V	TGCA	2 cut(s)	22, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	294, 310
HspAI	GCGC	1 cut(s)	589
Kpn2I	TCCGGA	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	5 cut(s)	196, 334, 444, 471, 522
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	4 cut(s)	44, 89, 113, 558
MboII	GAAGA	5 cut(s)	172, 347, 355, 390, 401
MfeI	CAATTG	2 cut(s)	26, 140
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	9 cut(s)	85, 179, 253, 371, 391, 423, 565, 577, 579
MroI	TCCGGA	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	5 cut(s)	297, 405, 519, 612, 654
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	2 cut(s)	183, 321
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	2 cut(s)	26, 140
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	1 cut(s)	483
NlaIII	CATG	2 cut(s)	294, 310
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	8 cut(s)	168, 179, 193, 242, 247, 324, 334, 436
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	5 cut(s)	297, 405, 519, 612, 654
SatI	GCNGC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	459
SetI	ASST	6 cut(s)	82, 264, 271, 428, 541, 692
SfcI	CTRYAG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	291
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	4 cut(s)	44, 89, 113, 558
StyD4I	CCNGG	1 cut(s)	457
TaqI	TCGA	5 cut(s)	39, 171, 222, 245, 366
TfiI	GAWTC	8 cut(s)	168, 179, 193, 242, 247, 324, 334, 436
Tru1I	TTAA	5 cut(s)	297, 405, 519, 612, 654
Tru9I	TTAA	5 cut(s)	297, 405, 519, 612, 654
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	275, 279, 323, 513
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	7 cut(s)	65, 124, 224, 310, 368, 392, 501
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	4 cut(s)	44, 89, 113, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.