Rroxscaffold_2G00132460
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001153
Physical Location & Seq
Forward (+)
69455273 .. 69463236
7964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132460.1

Sequence Viewer

Length: 867 bp
ATGGCCTCTAATGAAATGGAAGAAGATGACAAAGCCGAATCGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTGAAAAAAGGAGATATGCAAACTGTGATGCCCCGCAAAAAAAATTGGATGGAAATAAGTGATGAGTTGTTTGCTGAAACTACAAAAAGATACGTTGTACCAAAACTCAAGTCTAAGTTCAATAGACTACGGAAAAAACACCGTGAATTTTCTAATTTGATTGAACATACCGGATTTGGATGGGATCCTATTGCAAACACTGTTACTGCATCGGAGGAAGTATGGGCTACATATATTAAGAGAGTGCCAGGAGTGAAGCCATATCGTAAGAAAGGCTTGGAACATTATGAAATTTTAGGGGAAATATTTAATACTACTACTGCAACAGGTCAACTGCATTATGCCTCTAGCCAACTCCCTCCCAATTCAGATGAGGAGCGCGAGTTAGAGAACAAGTTTCTTAATAATGGAGTTCACATCAATCTTGATGAAGATTTCAAAATTAACAATGCTCAAACTGAAACAAAAGGAAAAAGAAAGGCTGTGACAGAGGCTCCATCTTTAGAGCGACGTACAAAAAAATGGGATAAAATGGAAGCCTACTTAGAAATTTGTGGTGAGGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGCTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGAGATATTGACCATGCCACATTTATTAAAATGATGGATAAGCTCATAATTCTTCAATGGAGGAGGCTTTTTCTTTCAATGTCAGATGAAAGAAGGAGAGCTTGGCTAGCTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

288

Amino Acids

33.82

Weight (kDa)

8.29

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 107 8e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 468
AciI CCGC 1 cut(s) 121
AclWI GGATC 2 cut(s) 266, 279
AcsI RAATTY 4 cut(s) 62, 233, 378, 636
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 3 cut(s) 186, 601, 710
AgsI TTSAA 6 cut(s) 208, 251, 526, 719, 803, 825
AjnI CCWGG 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 832, 864
AluBI AGCT 4 cut(s) 664, 790, 848, 857
AluI AGCT 4 cut(s) 664, 790, 848, 857
AlwI GGATC 2 cut(s) 266, 279
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 4 cut(s) 62, 233, 378, 636
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 656, 661
AsuNHI GCTAGC 1 cut(s) 853
BamHI GGATCC 1 cut(s) 271
BccI CCATC 4 cut(s) 130, 261, 592, 775
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 336
BfaI CTAG 3 cut(s) 435, 854, 865
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 273, 582
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 105, 305
BmtI GCTAGC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpuEI CTTGAG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 4 cut(s) 455, 485, 565, 595
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 141, 272
BseRI GAGGAG 2 cut(s) 476, 823
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 258
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 273, 582
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 2 cut(s) 266, 279
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 112, 230, 289
Bst6I CTCTTC 2 cut(s) 687, 714
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 3 cut(s) 48, 201, 631
BstF5I GGATG 2 cut(s) 141, 272
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 854
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 334
BstUI CGCG 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 141, 272
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 855
CfoI GCGC 1 cut(s) 468
Csp6I GTAC 3 cut(s) 185, 600, 709
CviAII CATG 3 cut(s) 80, 86, 761
CviQI GTAC 3 cut(s) 185, 600, 709
DdeI CTNAG 3 cut(s) 48, 201, 631
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 687, 714
EarI CTCTTC 2 cut(s) 687, 714
Eco57I CTGAAG 1 cut(s) 711
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 3 cut(s) 83, 89, 764
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 832, 864
FatI CATG 3 cut(s) 79, 85, 760
FauI CCCGC 1 cut(s) 128
FokI GGATG 2 cut(s) 148, 279
FspBI CTAG 3 cut(s) 435, 854, 865
GlaI GCGC 1 cut(s) 467
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 468
Hin1II CATG 3 cut(s) 83, 89, 764
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 656, 661
Hpy166II GTNNAC 2 cut(s) 419, 502
Hpy188I TCNGA 3 cut(s) 301, 457, 832
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 2 cut(s) 419, 502
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 2 cut(s) 50, 834
HpyCH4III ACNGT 3 cut(s) 112, 230, 289
HpyCH4IV ACGT 2 cut(s) 180, 598
HpyCH4V TGCA 7 cut(s) 79, 106, 281, 296, 410, 424, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 854
HpyF3I CTNAG 3 cut(s) 48, 201, 631
HpySE526I ACGT 2 cut(s) 180, 598
Hsp92II CATG 3 cut(s) 83, 89, 764
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 463, 586
LpnPI CCDG 4 cut(s) 271, 321, 348, 399
LweI GCATC 2 cut(s) 105, 305
MaeI CTAG 3 cut(s) 435, 854, 865
MaeII ACGT 2 cut(s) 180, 598
MaeIII GTNAC 2 cut(s) 289, 571
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 6 cut(s) 32, 35, 530, 704, 731, 791
MflI RGATCY 1 cut(s) 271
MnlI CCTC 9 cut(s) 16, 295, 442, 454, 456, 571, 640, 801, 804
MseI TTAA 5 cut(s) 324, 396, 489, 531, 774
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 854
NdeII GATC 1 cut(s) 271
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 3 cut(s) 83, 89, 764
NlaIV GGNNCC 2 cut(s) 273, 582
NmuCI GTSAC 1 cut(s) 571
NspI RCATGY 1 cut(s) 89
PfeI GAWTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 273, 582
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 3 cut(s) 186, 601, 710
RsaNI GTAC 3 cut(s) 185, 600, 709
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 5 cut(s) 324, 396, 489, 531, 774
Sau3AI GATC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 336
SetI ASST 8 cut(s) 183, 418, 601, 651, 666, 792, 850, 859
SfaNI GCATC 2 cut(s) 105, 305
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 1 cut(s) 121
SspI AATATT 1 cut(s) 393
SspMI CTAG 3 cut(s) 435, 854, 865
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 112, 230, 289
TaiI ACGT 2 cut(s) 183, 601
TatI WGTACW 1 cut(s) 708
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 5 cut(s) 324, 396, 489, 531, 774
Tru9I TTAA 5 cut(s) 324, 396, 489, 531, 774
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 571
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 7 cut(s) 27, 55, 69, 390, 531, 668, 849
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 292
XapI RAATTY 4 cut(s) 62, 233, 378, 636
XceI RCATGY 1 cut(s) 89
XspI CTAG 3 cut(s) 435, 854, 865
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.