Rh4BG064700
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
11566070 .. 11569659
3590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG064700.1

Sequence Viewer

Length: 306 bp
ATGGCCTCTAATGAAATGGAAGTTGATGACAAAGCCGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTGAAAAAAGGTGATATGCAAACGTCCACTTTCAAAAAGAAAATTTGGGTGGAAATAAGTGATGAGCTGTTTGCTGAAAGTACAAAAAGATATGTTGTACCACAACTAAAGTCTAAATTCAATAGACTACGCAAAAAACACCGTGAATTTTCTAATTTGATTAAGCATACCGGATTTGGGTGGGATCCTATTGCGAACACTGTAACTGCATCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.83

Weight (kDa)

9.4

Isoelectric Point (pI)

14.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 12 - 81 3.8e-07 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 13 - 101 7.1e-18 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 266, 279
AcsI RAATTY 4 cut(s) 62, 129, 203, 233
AfaI GTAC 2 cut(s) 169, 186
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 121, 208
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AlwI GGATC 2 cut(s) 266, 279
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 4 cut(s) 62, 129, 203, 233
AsuHPI GGTGA 1 cut(s) 110
BamHI GGATCC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BmiI GGNNCC 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 264
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 264
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 271
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 266, 279
BssMI GATC 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 230, 289
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 285
Csp6I GTAC 2 cut(s) 168, 185
CviAII CATG 2 cut(s) 80, 86
CviJI RGCY 3 cut(s) 5, 35, 154
CviKI_1 RGCY 3 cut(s) 5, 35, 154
CviQI GTAC 2 cut(s) 168, 185
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
FaeI CATG 2 cut(s) 83, 89
FaiI YATR 5 cut(s) 81, 87, 104, 180, 255
FatI CATG 2 cut(s) 79, 85
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 258
Hin1II CATG 2 cut(s) 83, 89
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 230, 289
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 79, 106, 296
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 83, 89
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 1 cut(s) 271
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MflI RGATCY 1 cut(s) 271
MluCI AATT 5 cut(s) 62, 129, 203, 233, 241
MnlI CCTC 1 cut(s) 16
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 258
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 83, 89
NlaIV GGNNCC 1 cut(s) 273
NspI RCATGY 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 169, 186
RsaNI GTAC 2 cut(s) 168, 185
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 249
Sau3AI GATC 1 cut(s) 271
SetI ASST 3 cut(s) 100, 113, 156
SgeI CNNG 4 cut(s) 92, 98, 242, 270
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 5 cut(s) 62, 129, 203, 233, 241
TaaI ACNGT 2 cut(s) 230, 289
TaiI ACGT 1 cut(s) 113
TasI AATT 5 cut(s) 62, 129, 203, 233, 241
TatI WGTACW 1 cut(s) 167
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 27, 55, 69
TspRI CASTG 1 cut(s) 292
XapI RAATTY 4 cut(s) 62, 129, 203, 233
XceI RCATGY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.