FvH4_7g00340
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001153
Physical Location & Seq
Forward (+)
959332 .. 961377
2046 bp
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UTR
Exon/CDS
Intron
FvH4_7g00340.t1

Sequence Viewer

Length: 441 bp
ATGGCCTCTAATGAAGTGGAAGTTGATGACAAAGCCGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTTAAGAAAGGAGACATGCAAACATCTACTTTCAAAAAGAAAATCTGGAACGAAATAAGTGATGAGTTGTTTGCTGAAACTACAAAAAGATATCTTGTGCCACAACTCAAGTCTAAGTTTAATAGACTGCGCAAAAAACATCGTGAGTTTTCTGATTTGATTGAGCATACCGGATTTGGATGGGATCCTATTGCAAACACTGTTACCGCATCAGAGGAAGTATGGGCTACATATATCAAGAGAGTGTCAGGAGTGAAACCCTATCGTAAGAAAGGCTTGGAGCATTATGAAATTTTAGGGGAAATATTTAACACTTCTACTGCAACAGGTCAACTACATTATGCCTCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

147

Amino Acids

16.98

Weight (kDa)

9.0

Isoelectric Point (pI)

25.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 13 - 107 4e-22 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 13 - 81 1.2e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 218
AciI CCGC 1 cut(s) 294
AclWI GGATC 2 cut(s) 266, 279
AcsI RAATTY 2 cut(s) 62, 378
AgsI TTSAA 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 2 cut(s) 266, 279
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 62, 378
AspLEI GCGC 1 cut(s) 219
BamHI GGATCC 1 cut(s) 271
BccI CCATC 1 cut(s) 261
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BcoDI GTCTC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 257
BseGI GGATG 1 cut(s) 272
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 266, 279
BssMI GATC 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 48, 201
BstF5I GGATG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 271
BstNSI RCATGY 2 cut(s) 89, 106
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 285
CfoI GCGC 1 cut(s) 219
CviAII CATG 3 cut(s) 80, 86, 103
CviJI RGCY 4 cut(s) 5, 35, 314, 363
CviKI_1 RGCY 4 cut(s) 5, 35, 314, 363
DdeI CTNAG 2 cut(s) 48, 201
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco32I GATATC 1 cut(s) 179
EcoRV GATATC 1 cut(s) 179
FaeI CATG 3 cut(s) 83, 89, 106
FaiI YATR 9 cut(s) 81, 87, 104, 255, 310, 319, 321, 375, 429
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 3 cut(s) 79, 85, 102
FokI GGATG 1 cut(s) 279
FspI TGCGCA 1 cut(s) 218
GlaI GCGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 219
Hin1II CATG 3 cut(s) 83, 89, 106
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 241, 301
Hpy188III TCNNGA 4 cut(s) 133, 230, 325, 336
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 79, 106, 281, 410
HpyF3I CTNAG 2 cut(s) 48, 201
Hsp92II CATG 3 cut(s) 83, 89, 106
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 4 cut(s) 118, 271, 321, 399
LweI GCATC 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MflI RGATCY 1 cut(s) 271
MluCI AATT 2 cut(s) 62, 378
MnlI CCTC 2 cut(s) 16, 295
MseI TTAA 4 cut(s) 90, 207, 396, 439
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 258
NdeII GATC 1 cut(s) 271
NlaIII CATG 3 cut(s) 83, 89, 106
NlaIV GGNNCC 1 cut(s) 273
NsbI TGCGCA 1 cut(s) 218
NspI RCATGY 2 cut(s) 89, 106
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 4 cut(s) 90, 207, 396, 439
Sau3AI GATC 1 cut(s) 271
SetI ASST 1 cut(s) 418
SfaNI GCATC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 62, 378
SsiI CCGC 1 cut(s) 294
SspI AATATT 1 cut(s) 393
TaaI ACNGT 1 cut(s) 289
TasI AATT 2 cut(s) 62, 378
Tru1I TTAA 4 cut(s) 90, 207, 396, 439
Tru9I TTAA 4 cut(s) 90, 207, 396, 439
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 27, 55, 69, 390
TspRI CASTG 1 cut(s) 292
XapI RAATTY 2 cut(s) 62, 378
XceI RCATGY 2 cut(s) 89, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.