Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003547.1

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

12605 .. 13470

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003547.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgcaaacgtccactttcaaaaagaaaatttgggtggaaataagtgatgagttgtttgctgaaagcacaaaaagatatgttgtgccacaactaaagtctaaattcaatagactacgcaaaaaacaccgtgaattttctgatttgattgagcataccggatttgggtgggatcctattgcgaacactgtaactgcatcagaggaagtatgggctacatatattaagagagtgccaggagtgaagccatatcgtaagaaagggttggaacattatgaaattttaggggaaatatttaacactactactgcaacgggtcaactacattatgcctctagccaactccctcccaattcagatgaagagcgcgagttagagaacaagtttcttaataatggagttcatatcaatcttgatgaggatttcaatattaataatgctcaaattgagacaaaaggaaaaagaaaggctatgacagaggctccagcttcagagcgtcgtacaaagaaatgggacaaaatggaagcctacttagaaatttgtggtgaggtgatgaaagaaaagctacaacaaagaaaagaaaaaaatactgaagagaataaggagaagtactccattgaagagtgtgtgcaaattgtggaaacattgggagacattgaccatgccacatttatcaaaatgatggataagcttataattgttgaatggaggaggctctttctttccatgtcagatgaaagaaggagagcttggctagctaatctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

254

Amino Acids

29.91

Weight (kDa)

7.73

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AccII	CGCG	1 cut(s)	366
AclWI	GGATC	2 cut(s)	164, 177
AcsI	RAATTY	5 cut(s)	27, 101, 131, 276, 534
AcuI	CTGAAG	2 cut(s)	471, 609
AfaI	GTAC	2 cut(s)	499, 608
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	19, 106, 424, 617, 701
AjnI	CCWGG	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	730, 762
AluBI	AGCT	5 cut(s)	485, 562, 688, 746, 755
AluI	AGCT	5 cut(s)	485, 562, 688, 746, 755
Alw26I	GTCTC	2 cut(s)	440, 642
AlwI	GGATC	2 cut(s)	164, 177
ApoI	RAATTY	5 cut(s)	27, 101, 131, 276, 534
AseI	ATTAAT	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	366
AsuHPI	GGTGA	2 cut(s)	554, 559
AsuNHI	GCTAGC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	169
BccI	CCATC	1 cut(s)	673
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	440, 642
BfaI	CTAG	3 cut(s)	333, 752, 763
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	171, 480
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	203
BmtI	GCTAGC	1 cut(s)	755
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpmI	CTGGAG	1 cut(s)	465
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	440, 642
BsmFI	GGGAC	1 cut(s)	524
Bsp143I	GATC	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	171, 480
BspOI	GCTAGC	1 cut(s)	755
BspPI	GGATC	2 cut(s)	164, 177
BspQI	GCTCTTC	1 cut(s)	354
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	128, 187
Bst6I	CTCTTC	3 cut(s)	354, 585, 612
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	440, 642
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	752
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	753
CfoI	GCGC	1 cut(s)	366
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	498, 607
CviAII	CATG	2 cut(s)	659, 724
CviQI	GTAC	2 cut(s)	498, 607
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	354, 585, 612
EarI	CTCTTC	3 cut(s)	354, 585, 612
Eco57I	CTGAAG	2 cut(s)	471, 609
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	662, 727
FalI	AAGNNNNNCTT	2 cut(s)	730, 762
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	658, 723
FspBI	CTAG	3 cut(s)	333, 752, 763
GlaI	GCGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	465
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	662, 727
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	686
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	554, 559
Hpy166II	GTNNAC	2 cut(s)	12, 317
Hpy188I	TCNGA	5 cut(s)	139, 199, 355, 490, 730
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	12, 317
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	1 cut(s)	732
HpyCH4III	ACNGT	2 cut(s)	128, 187
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	4, 194, 308, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	752
HpyF3I	CTNAG	1 cut(s)	529
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	662, 727
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	4 cut(s)	169, 219, 246, 495
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	3 cut(s)	333, 752, 763
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	371, 602, 629
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	9 cut(s)	27, 101, 131, 276, 349, 441, 534, 630, 693
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	8 cut(s)	193, 340, 354, 409, 469, 538, 699, 702
MseI	TTAA	4 cut(s)	222, 294, 387, 429
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	752
NdeII	GATC	1 cut(s)	169
NheI	GCTAGC	1 cut(s)	751
NlaIII	CATG	2 cut(s)	662, 727
NlaIV	GGNNCC	2 cut(s)	171, 480
PciSI	GCTCTTC	1 cut(s)	354
PshBI	ATTAAT	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	171, 480
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	499, 608
RsaNI	GTAC	2 cut(s)	498, 607
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	222, 294, 387, 429
Sau3AI	GATC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	7 cut(s)	11, 487, 549, 564, 690, 748, 757
SfaNI	GCATC	1 cut(s)	203
Sse9I	AATT	9 cut(s)	27, 101, 131, 276, 349, 441, 534, 630, 693
SspI	AATATT	2 cut(s)	291, 427
SspMI	CTAG	3 cut(s)	333, 752, 763
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	128, 187
TaiI	ACGT	1 cut(s)	11
TasI	AATT	9 cut(s)	27, 101, 131, 276, 349, 441, 534, 630, 693
TatI	WGTACW	1 cut(s)	606
Tru1I	TTAA	4 cut(s)	222, 294, 387, 429
Tru9I	TTAA	4 cut(s)	222, 294, 387, 429
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	5 cut(s)	288, 372, 389, 566, 747
TspRI	CASTG	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	5 cut(s)	27, 101, 131, 276, 534
XspI	CTAG	3 cut(s)	333, 752, 763
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.