Rorug07G0196300
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
16892835 .. 16893149
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0196300.1

Sequence Viewer

Length: 315 bp
ATGGCTGAAGGGCGGTTTCTTTTCTACTTCCGGCATAGGGAGGAATGCAATAAGATTTTGCATGGACGTCCATGGTTCTTCAATGGTCGTATGCTCTTGTTGGGTGAGTATGATGAGCTGAGTGAGGTTGAGGAGGTGGTGCTGAACTCCTTGGAAAACTGGGTGATTGTATGGCGGTTGCCGCCGCAGTTGAGAATCGAGGAATTTATTATCCTCGTTAGTTCTTCAATGGGACGTTATCTGATGTCCAATCAATTTTCTTTCCAACATTGTGTTTTAGGGTTATCTTGGATGTGCGTAGTCGACTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.41

Weight (kDa)

5.29

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 303
AciI CCGC 4 cut(s) 13, 175, 182, 185
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 82, 228
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
ApoI RAATTY 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 116, 175
BfaI CTAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 182, 185
BlsI GCNGC 2 cut(s) 183, 186
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 71, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 71, 150
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 50
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 4 cut(s) 13, 175, 182, 185
BspCNI CTCAG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 71, 150
BssNI GRCGYC 1 cut(s) 67
BssT1I CCWWGG 2 cut(s) 71, 150
BstACI GRCGYC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 297
CviAII CATG 2 cut(s) 62, 72
CviJI RGCY 2 cut(s) 5, 118
CviKI_1 RGCY 2 cut(s) 5, 118
DdeI CTNAG 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 71, 150
Eco57I CTGAAG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 71, 150
ErhI CCWWGG 2 cut(s) 71, 150
FaeI CATG 2 cut(s) 65, 75
FaiI YATR 6 cut(s) 36, 63, 73, 92, 111, 172
FaqI GGGAC 1 cut(s) 246
FatI CATG 2 cut(s) 61, 71
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 182, 185
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 2 cut(s) 182, 185
FspBI CTAG 1 cut(s) 309
GluI GCNGC 2 cut(s) 182, 185
HapII CCGG 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 65, 75
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 2 cut(s) 195, 305
HpaII CCGG 1 cut(s) 31
HphI GGTGA 2 cut(s) 116, 175
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 67, 235
HpyCH4V TGCA 2 cut(s) 48, 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 67, 235
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 65, 75
LpnPI CCDG 2 cut(s) 44, 145
MaeI CTAG 1 cut(s) 309
MaeII ACGT 2 cut(s) 67, 235
MboII GAAGA 2 cut(s) 70, 216
MluCI AATT 2 cut(s) 203, 254
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 6 cut(s) 34, 118, 124, 127, 193, 224
MseI TTAA 1 cut(s) 313
MspI CCGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 71
NlaIII CATG 2 cut(s) 65, 75
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 183, 186
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 2 cut(s) 182, 185
SchI GAGTC 1 cut(s) 299
SetI ASST 5 cut(s) 70, 120, 129, 138, 238
SgeI CNNG 9 cut(s) 43, 74, 84, 109, 163, 172, 211, 227, 300
Sse9I AATT 2 cut(s) 203, 254
SsiI CCGC 4 cut(s) 13, 175, 182, 185
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 71, 150
TaiI ACGT 2 cut(s) 70, 238
TaqI TCGA 2 cut(s) 198, 303
TasI AATT 2 cut(s) 203, 254
TauI GCSGC 2 cut(s) 184, 187
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
XapI RAATTY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 309
ZraI GACGTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.