Rw6G008400
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001153
Physical Location & Seq
Forward (+)
14296754 .. 14297914
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008400.1

Sequence Viewer

Length: 864 bp
ATGGCCTCTAATGAAATGGAAGTCGATGACAAAGCCGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTGAAAAAAGGAGATATGCAAACATCCACTTTCAAAAAGAAAATTTGGATGGAAATAAGTGATGAGTTGTTTGCTGAAACTATGAAAAGATACAATGTGGCACAACTCAAGTCTAAGTTCAATAGACTACGCAAAAAACATCGTGAATTTTCTGATTCGATTGAGCATACCGGATTTGGATGGGACCCTATTGCAAACACTGTTACTACATCAGAGGAAGTATGGGCTACTTATATTAAGAGAGTACCGGGAGTGAAGCCCTATCGTAAGAAAGGCTTGGAACATTATGAAACTTTAGGGGAAATATTCAATACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGCCAGCTCCCTCCCAATTCAGATGATGAGCGCGAGTTAGAGAATAAGTTTCTTAACAATGGAGTTCACATCAATCTTAATGAGGATTTCGATGTTAATAATCAAAATGAGATCAGAGGGAAAAGAAAAGCTGTGACAGAGGCTCCACCTTCAGAGCGTCGAACAAAAAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTGAAGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGCTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGAGACATTGATCATGCCACATTTATTAAAATGATGGATAAACTTATAGTTGTTGAATGGAGGAGGCTTTTCCTTACCATGTCAAATGAAAGAAGGAGAGCTTGGCTAGCTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

287

Amino Acids

33.79

Weight (kDa)

7.11

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 13 - 107 2.9e-19 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 13 - 87 4.4e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 468
AcsI RAATTY 4 cut(s) 62, 129, 233, 633
AcuI CTGAAG 2 cut(s) 570, 708
AfaI GTAC 2 cut(s) 333, 707
AgsI TTSAA 5 cut(s) 121, 208, 397, 716, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 829, 861
AluBI AGCT 5 cut(s) 442, 566, 661, 845, 854
AluI AGCT 5 cut(s) 442, 566, 661, 845, 854
Alw26I GTCTC 1 cut(s) 741
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 4 cut(s) 62, 129, 233, 633
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 653
AsuNHI GCTAGC 1 cut(s) 850
AvaII GGWCC 1 cut(s) 271
BccI CCATC 3 cut(s) 130, 261, 772
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 3 cut(s) 435, 851, 862
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 272, 273, 579
BmrFI CCNGG 1 cut(s) 336
BmtI GCTAGC 1 cut(s) 854
BplI GAGNNNNNCTC 2 cut(s) 692, 724
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
BseGI GGATG 3 cut(s) 110, 141, 272
BseRI GAGGAG 1 cut(s) 820
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 258, 335
BslFI GGGAC 2 cut(s) 284, 623
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 2 cut(s) 284, 623
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 546, 754
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 3 cut(s) 272, 273, 579
BspOI GCTAGC 1 cut(s) 854
BssMI GATC 2 cut(s) 546, 754
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 684, 711
BstC8I GCNNGC 2 cut(s) 440, 852
BstDEI CTNAG 3 cut(s) 48, 201, 628
BstF5I GGATG 3 cut(s) 110, 141, 272
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 2 cut(s) 549, 757
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 2 cut(s) 546, 754
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 334
BstUI CGCG 1 cut(s) 468
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 110, 141, 272
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 440, 852
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 581
Csp6I GTAC 2 cut(s) 332, 706
CviAII CATG 4 cut(s) 80, 86, 758, 823
CviQI GTAC 2 cut(s) 332, 706
DdeI CTNAG 3 cut(s) 48, 201, 628
DpnI GATC 2 cut(s) 548, 756
DpnII GATC 2 cut(s) 546, 754
Eam1104I CTCTTC 2 cut(s) 684, 711
EarI CTCTTC 2 cut(s) 684, 711
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 570, 708
EcoO109I RGGNCCY 1 cut(s) 271
FaeI CATG 4 cut(s) 83, 89, 761, 826
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 829, 861
FaqI GGGAC 2 cut(s) 284, 623
FatI CATG 4 cut(s) 79, 85, 757, 822
FbaI TGATCA 1 cut(s) 754
FokI GGATG 3 cut(s) 97, 148, 279
FspBI CTAG 3 cut(s) 435, 851, 862
GlaI GCGC 1 cut(s) 467
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 258, 335
HgaI GACGC 1 cut(s) 581
HhaI GCGC 1 cut(s) 468
Hin1II CATG 4 cut(s) 83, 89, 761, 826
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HinfI GANTC 1 cut(s) 242
HpaII CCGG 2 cut(s) 258, 335
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 2 cut(s) 419, 502
Hpy188I TCNGA 5 cut(s) 241, 301, 457, 551, 589
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 419, 502
Hpy99I CGWCG 1 cut(s) 597
HpyAV CCTTC 3 cut(s) 50, 594, 831
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 5 cut(s) 79, 106, 281, 410, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 3 cut(s) 48, 201, 628
Hsp92II CATG 4 cut(s) 83, 89, 761, 826
HspAI GCGC 1 cut(s) 466
KflI GGGWCCC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 2 cut(s) 546, 754
LmnI GCTCC 2 cut(s) 447, 583
LpnPI CCDG 3 cut(s) 271, 348, 452
MaeI CTAG 3 cut(s) 435, 851, 862
MaeIII GTNAC 2 cut(s) 289, 568
MalI GATC 2 cut(s) 548, 756
MboI GATC 2 cut(s) 546, 754
MboII GAAGA 2 cut(s) 701, 728
MluCI AATT 6 cut(s) 62, 129, 233, 451, 633, 729
MnlI CCTC 9 cut(s) 16, 295, 442, 456, 511, 545, 568, 798, 801
MseI TTAA 5 cut(s) 324, 489, 513, 531, 771
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 2 cut(s) 258, 335
MspR9I CCNGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 851
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 546, 754
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 4 cut(s) 83, 89, 761, 826
NlaIV GGNNCC 3 cut(s) 272, 273, 579
NmuCI GTSAC 1 cut(s) 568
NspI RCATGY 1 cut(s) 89
PfeI GAWTC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspN4I GGNNCC 3 cut(s) 272, 273, 579
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 333, 707
RsaNI GTAC 2 cut(s) 332, 706
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 5 cut(s) 324, 489, 513, 531, 771
Sau3AI GATC 2 cut(s) 546, 754
Sau96I GGNCC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 707
ScrFI CCNGG 1 cut(s) 336
SetI ASST 6 cut(s) 444, 568, 586, 663, 847, 856
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 6 cut(s) 62, 129, 233, 451, 633, 729
SspI AATATT 1 cut(s) 393
SspMI CTAG 3 cut(s) 435, 851, 862
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 4 cut(s) 24, 245, 525, 595
TasI AATT 6 cut(s) 62, 129, 233, 451, 633, 729
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 5 cut(s) 324, 489, 513, 531, 771
Tru9I TTAA 5 cut(s) 324, 489, 513, 531, 771
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 568
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 7 cut(s) 27, 55, 69, 185, 390, 665, 846
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 4 cut(s) 62, 129, 233, 633
XceI RCATGY 1 cut(s) 89
XspI CTAG 3 cut(s) 435, 851, 862
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.