Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

35000665 .. 35003198

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCCCTCTAATGAAATGGAAGTCGATGACAAAGCCGAATGGTCTGCTAATAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTGAAAAAAGGAGATATGCAAACATCCACTTTCAAAAAGAAAATTTGGATGGAAATAAGTGATGAGTTGTTTGCTGAAACTATGAAAAGATACACTGTGGCACAACTCAAGTCTAAGTTCAATAGACTACGCAAAAAACATCGTGAATTTTCTGATTTGATTGAGCATACCGGATTTGGATGGGACCCTCTTGCAAACACTGTTATTGCATTAGAGGAAGTATGGGCTACTTATATTAAGAGAGTACCAGGAGTGAAGCCCTATCGTAAGAAAGGCTTGGAACATTATGAAACTTTAGGGGAAATATTCAATACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGCCAGCTCCCTCCCAATTCAGATGATGAGCGCGAGTTAGAGAATAAGTTTCTTAACAATGGAGCTAAGGAGGTTTGGGAGAGGTTGGTGATGGACTCGAAGGCTTATCCGAATATGATTATAGACATGGAAGATGGTGACTCAGATAGTTCTTCAGAACTAGATGAAATGTCACAACATATGATAATATGTATGAACATCTATGATTATTGGTCTTCATACATAGACAAGGTTCCTTGCCATACATCAATATTACCTGGAGCTGAATATGTGCAAGAGTTGTTGAATGGACATCCAGATAGAATTTATAACTCATTTTGCATGGATAAACATGTATTTCAAAGGTTGTGTTGCACGCTTGAGAGTTTAAATTTATTAAAAGATGATCGGCATGTAGGCATTCAAGAGGCCGTGGCTATTTTCTTATATATAGTATCTCATAGTGAGCGCATGAGAATGGCTGCTAAGCGCTTTCAACGGTCAAAAGATACTATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

311

Amino Acids

36.3

Weight (kDa)

5.83

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	13 - 107	3.6e-20	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4	PF13837	13 - 80	7.8e-07	Myb/SANT-like DNA-binding domain
DUF8040	PF26138	227 - 311	1.2e-32	Domain of unknown function (DUF8040)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
AccII	CGCG	1 cut(s)	468
AcsI	RAATTY	5 cut(s)	62, 129, 233, 738, 805
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	333
AfeI	AGCGCT	1 cut(s)	905
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	7 cut(s)	121, 208, 397, 721, 776, 839, 911
AjnI	CCWGG	2 cut(s)	334, 691
AluBI	AGCT	3 cut(s)	442, 500, 698
AluI	AGCT	3 cut(s)	442, 500, 698
Aor51HI	AGCGCT	1 cut(s)	905
AoxI	GGCC	1 cut(s)	843
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	5 cut(s)	62, 129, 233, 738, 805
AspLEI	GCGC	3 cut(s)	468, 885, 906
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	535, 584
AvaII	GGWCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	4 cut(s)	130, 261, 520, 563
BceAI	ACGGC	1 cut(s)	830
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	2 cut(s)	336, 693
BfaI	CTAG	2 cut(s)	435, 596
BfoI	RGCGCY	1 cut(s)	907
BisI	GCNGC	1 cut(s)	897
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	1 cut(s)	898
Bme1390I	CCNGG	2 cut(s)	336, 693
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	272, 273, 669
BmrFI	CCNGG	2 cut(s)	336, 693
BpiI	GAAGAC	1 cut(s)	642
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	2 cut(s)	179, 815
BsaJI	CCNNGG	1 cut(s)	846
BsaWI	WCCGGW	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	336, 693
BseDI	CCNNGG	1 cut(s)	846
BseGI	GGATG	4 cut(s)	110, 141, 272, 727
BseMII	CTCAG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	883
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	845
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	1 cut(s)	845
Bsp143I	GATC	1 cut(s)	820
Bsp1720I	GCTNAGC	1 cut(s)	900
BspANI	GGCC	1 cut(s)	845
BspCNI	CTCAG	1 cut(s)	590
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	3 cut(s)	272, 273, 669
BssECI	CCNNGG	1 cut(s)	846
BssMI	GATC	1 cut(s)	820
Bst2UI	CCWGG	2 cut(s)	336, 693
Bst4CI	ACNGT	3 cut(s)	184, 289, 915
BstC8I	GCNNGC	2 cut(s)	440, 791
BstDEI	CTNAG	4 cut(s)	201, 501, 577, 900
BstDSI	CCRYGG	1 cut(s)	846
BstF5I	GGATG	4 cut(s)	110, 141, 272, 727
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	907
BstHHI	GCGC	3 cut(s)	468, 885, 906
BstKTI	GATC	1 cut(s)	823
BstMBI	GATC	1 cut(s)	820
BstNI	CCWGG	2 cut(s)	336, 693
BstNSI	RCATGY	3 cut(s)	89, 770, 830
BstSCI	CCNGG	2 cut(s)	334, 691
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	883
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	845
BtgI	CCRYGG	1 cut(s)	846
BtsCI	GGATG	4 cut(s)	110, 141, 272, 727
BtsIMutI	CAGTG	2 cut(s)	180, 285
Cac8I	GCNNGC	2 cut(s)	440, 791
CfoI	GCGC	3 cut(s)	468, 885, 906
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	7 cut(s)	80, 86, 562, 757, 767, 827, 886
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	4 cut(s)	201, 501, 577, 900
DpnI	GATC	1 cut(s)	822
DpnII	GATC	1 cut(s)	820
DraI	TTTAAA	1 cut(s)	804
Eco47I	GGWCC	1 cut(s)	271
Eco47III	AGCGCT	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	334, 691
FaeI	CATG	7 cut(s)	83, 89, 565, 760, 770, 830, 889
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	7 cut(s)	79, 85, 561, 756, 766, 826, 885
FauNDI	CATATG	1 cut(s)	615
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	4 cut(s)	97, 148, 279, 714
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	2 cut(s)	435, 596
GlaI	GCGC	3 cut(s)	467, 884, 905
GluI	GCNGC	1 cut(s)	897
GsuI	CTGGAG	1 cut(s)	714
HaeII	RGCGCY	1 cut(s)	907
HaeIII	GGCC	1 cut(s)	845
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	3 cut(s)	468, 885, 906
Hin1II	CATG	7 cut(s)	83, 89, 565, 760, 770, 830, 889
Hin6I	GCGC	3 cut(s)	466, 883, 904
HinP1I	GCGC	3 cut(s)	466, 883, 904
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HinfI	GANTC	2 cut(s)	530, 575
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	535, 584
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	5 cut(s)	241, 457, 546, 580, 592
Hpy188III	TCNNGA	3 cut(s)	230, 731, 839
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	50, 529
HpyCH4III	ACNGT	3 cut(s)	184, 289, 915
HpyCH4V	TGCA	8 cut(s)	79, 106, 281, 296, 410, 709, 756, 789
HpyF3I	CTNAG	4 cut(s)	201, 501, 577, 900
Hsp92II	CATG	7 cut(s)	83, 89, 565, 760, 770, 830, 889
HspAI	GCGC	3 cut(s)	466, 883, 904
KflI	GGGWCCC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	820
LmnI	GCTCC	3 cut(s)	447, 497, 695
LpnPI	CCDG	7 cut(s)	271, 321, 348, 452, 678, 705, 744
Lsp1109I	GCAGC	1 cut(s)	883
MaeI	CTAG	2 cut(s)	435, 596
MaeIII	GTNAC	2 cut(s)	572, 606
MalI	GATC	1 cut(s)	822
MboI	GATC	1 cut(s)	820
MboII	GAAGA	3 cut(s)	578, 579, 642
MluCI	AATT	6 cut(s)	62, 129, 233, 451, 738, 805
MlyI	GAGTC	2 cut(s)	524, 569
MnlI	CCTC	8 cut(s)	16, 285, 295, 442, 456, 499, 510, 835
MseI	TTAA	4 cut(s)	324, 489, 803, 812
MslI	CAYNNNNRTG	2 cut(s)	84, 890
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	2 cut(s)	336, 693
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	2 cut(s)	336, 693
MvnI	CGCG	1 cut(s)	468
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	1 cut(s)	820
NlaIII	CATG	7 cut(s)	83, 89, 565, 760, 770, 830, 889
NlaIV	GGNNCC	3 cut(s)	272, 273, 669
NmuCI	GTSAC	2 cut(s)	572, 606
NspI	RCATGY	3 cut(s)	89, 770, 830
PciI	ACATGT	1 cut(s)	766
PctI	GAATGC	1 cut(s)	834
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	2 cut(s)	524, 569
PpsI	GAGTC	2 cut(s)	524, 569
PpuMI	RGGWCCY	1 cut(s)	271
PscI	ACATGT	1 cut(s)	766
PsiI	TTATAA	1 cut(s)	744
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	334, 691
PspGI	CCWGG	2 cut(s)	334, 691
PspN4I	GGNNCC	3 cut(s)	272, 273, 669
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	2 cut(s)	84, 890
SaqAI	TTAA	4 cut(s)	324, 489, 803, 812
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	1 cut(s)	820
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	2 cut(s)	524, 569
ScrFI	CCNGG	2 cut(s)	336, 693
SetI	ASST	8 cut(s)	444, 502, 510, 521, 669, 694, 700, 782
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	84, 890
SmlI	CTYRAG	2 cut(s)	194, 794
SmoI	CTYRAG	2 cut(s)	194, 794
Sse9I	AATT	6 cut(s)	62, 129, 233, 451, 738, 805
SspI	AATATT	2 cut(s)	393, 687
SspMI	CTAG	2 cut(s)	435, 596
StyD4I	CCNGG	2 cut(s)	334, 691
TaaI	ACNGT	3 cut(s)	184, 289, 915
TaqI	TCGA	2 cut(s)	24, 533
TasI	AATT	6 cut(s)	62, 129, 233, 451, 738, 805
Tru1I	TTAA	4 cut(s)	324, 489, 803, 812
Tru9I	TTAA	4 cut(s)	324, 489, 803, 812
TscAI	CASTG	2 cut(s)	187, 292
TseFI	GTSAC	2 cut(s)	572, 606
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	2 cut(s)	572, 606
TspDTI	ATGAA	9 cut(s)	27, 55, 69, 185, 390, 615, 642, 644, 920
TspRI	CASTG	2 cut(s)	187, 292
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	5 cut(s)	62, 129, 233, 738, 805
XceI	RCATGY	3 cut(s)	89, 770, 830
XspI	CTAG	2 cut(s)	435, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.