Rh4DG015100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001153
Physical Location & Seq
Reverse (-)
2352072 .. 2352628
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG015100.1

Sequence Viewer

Length: 456 bp
ATGGCCTCTAATGAAATGGAAGTTGATGACAAAGCCGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTGAAAAAAGGAGATATGCAAACGTCCACTTTCAAAAAGAAAATTTGGGTGGAAATAAGTGATGAGCTGTTTGCTGAAAGTACAAAAAGATATGTTGTGCCACAACTAAAGTCTAAATTCAATAGACTACGCAAAAAACACCGTGAATTTTCTGATTTGATTGAGCATACCGGATTTGGATGGGATCCTATTGCGAACACTGTTACTGCATCAGAGGAAGTATGGGCTACATATATTAAGAGAGTGCCAGGAGTGAAGCCATATCGTAAGAAAGGGTTGGAACATTATGAAATTTTAGGGGAAATATTTAACACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGCCAACTCCCTCCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

151

Amino Acids

17.51

Weight (kDa)

9.0

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 13 - 107 3.2e-21 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 13 - 81 1.3e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 266, 279
AcsI RAATTY 5 cut(s) 62, 129, 203, 233, 378
AfaI GTAC 1 cut(s) 169
AgsI TTSAA 2 cut(s) 121, 208
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AlwI GGATC 2 cut(s) 266, 279
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 5 cut(s) 62, 129, 203, 233, 378
BamHI GGATCC 1 cut(s) 271
BccI CCATC 1 cut(s) 261
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 336
BfaI CTAG 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 257
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 272
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 258
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 271
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 266, 279
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 230, 289
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 285
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 80, 86
CviJI RGCY 6 cut(s) 5, 35, 154, 314, 346, 438
CviKI_1 RGCY 6 cut(s) 5, 35, 154, 314, 346, 438
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 83, 89
FatI CATG 2 cut(s) 79, 85
FokI GGATG 1 cut(s) 279
FspBI CTAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 258
Hin1II CATG 2 cut(s) 83, 89
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 114, 419
Hpy188I TCNGA 2 cut(s) 241, 301
Hpy8I GTNNAC 2 cut(s) 114, 419
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 230, 289
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 79, 106, 296, 410
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 83, 89
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 3 cut(s) 271, 321, 348
LweI GCATC 1 cut(s) 305
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MflI RGATCY 1 cut(s) 271
MluCI AATT 6 cut(s) 62, 129, 203, 233, 378, 451
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 4 cut(s) 16, 295, 442, 456
MseI TTAA 3 cut(s) 324, 396, 454
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 83, 89
NlaIV GGNNCC 1 cut(s) 273
NspI RCATGY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 3 cut(s) 324, 396, 454
Sau3AI GATC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 336
SetI ASST 2 cut(s) 113, 156
SfaNI GCATC 1 cut(s) 305
SgeI CNNG 8 cut(s) 92, 98, 242, 270, 347, 348, 426, 447
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 6 cut(s) 62, 129, 203, 233, 378, 451
SspI AATATT 1 cut(s) 393
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 230, 289
TaiI ACGT 1 cut(s) 113
TasI AATT 6 cut(s) 62, 129, 203, 233, 378, 451
TatI WGTACW 1 cut(s) 167
Tru1I TTAA 3 cut(s) 324, 396, 454
Tru9I TTAA 3 cut(s) 324, 396, 454
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 27, 55, 69, 390
TspRI CASTG 1 cut(s) 292
XapI RAATTY 5 cut(s) 62, 129, 203, 233, 378
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.