pycom03g21560
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001153
Physical Location & Seq
Forward (+)
21847116 .. 21847865
750 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21560.1

Sequence Viewer

Length: 660 bp
ATGTGTTGGGACCCTGAGACCGACAAGGTACATGCATCTGAAGAAGTTTGGGAGTCCTACCTTAAGAAAAACAAGTTTGCTAGTCGCTTTCGTAGAAAGGGATGCCCGGAGTATCAAGTGCTCAGAGAGATCTTCAACCACATACCTTCTACTGGACAAATGCATTCTGGATCCACTGCATCTCCTCCAAACTCTGATGTCGAGAGAGGCTTAGAGTCCGAGTTTCCCAGCTCCGGGGCACGCACTAGCCCTGATACTGAAGGCGGCATAGATACTAAAAATAAAGGAGACGAAGGTACTAGCAAGACCCAAAAGCGCCGTCCTTTAAGTCCCCCAGGTTATTGCCGCACAAGAAAGGAATCAAAGACATCGAAGGCGGCCAAGCTAGGTGATGGAGTGGATGTATGCGCAGTATCTCCAGATGCCGAGACTGAATCTTCGTTACCAAAGGTTGAATGCAGAAAGAAGAACGATTTTTCATCCTCTTTTAGAGAATTGGCCTCGATTGAAGATTGTATGGAAATACTCGAGGCTATGGAGGATTTGGATGACGCTGCCTATGTTAGAGCTTGTGAGAGGTTTACGAGTTCGGATTGGAGGAGGATGTTCATGAAGATGTCTGATGCAAGGAAAAGAATGTGGCTGTATAGCCTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 Myb_DNA-bind_3

Protein Analysis

220

Amino Acids

24.81

Weight (kDa)

6.84

Isoelectric Point (pI)

67.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 409
AciI CCGC 3 cut(s) 264, 346, 377
AclWI GGATC 2 cut(s) 165, 178
AcoI YGGCCR 1 cut(s) 378
AcuI CTGAAG 2 cut(s) 60, 279
AfaI GTAC 2 cut(s) 30, 298
AfiI CCNNNNNNNGG 3 cut(s) 152, 233, 234
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 3 cut(s) 136, 455, 509
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 231, 385, 569
AluI AGCT 3 cut(s) 231, 385, 569
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 3 cut(s) 11, 282, 422
AlwI GGATC 2 cut(s) 165, 178
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 2 cut(s) 378, 498
ApeKI GCWGC 1 cut(s) 554
ArsI GACNNNNNNTTYG 4 cut(s) 304, 336, 421, 453
AspLEI GCGC 2 cut(s) 318, 410
AspS9I GGNCC 1 cut(s) 10
AsuC2I CCSGG 2 cut(s) 107, 235
AsuHPI GGTGA 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 241
BamHI GGATCC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 541
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 2 cut(s) 107, 235
BcoDI GTCTC 3 cut(s) 11, 282, 422
BfaI CTAG 4 cut(s) 81, 246, 300, 386
BfoI RGCGCY 1 cut(s) 319
BfrI CTTAAG 1 cut(s) 62
BglII AGATCT 1 cut(s) 129
BisI GCNGC 4 cut(s) 265, 346, 378, 555
BlsI GCNGC 4 cut(s) 266, 347, 379, 556
Bme1390I CCNGG 3 cut(s) 107, 235, 336
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 3 cut(s) 11, 12, 172
BmrFI CCNGG 3 cut(s) 107, 235, 336
BmsI GCATC 5 cut(s) 44, 92, 188, 412, 613
BpmI CTGGAG 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 107, 235
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 234, 334
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 387, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 233, 234
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 234, 334
BseGI GGATG 5 cut(s) 107, 406, 479, 553, 609
BseLI CCNNNNNNNGG 3 cut(s) 152, 233, 234
BseMII CTCAG 2 cut(s) 6, 136
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 2 cut(s) 174, 613
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 1 cut(s) 541
BseYI CCCAGC 1 cut(s) 227
BshFI GGCC 2 cut(s) 380, 500
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 2 cut(s) 107, 234
BslFI GGGAC 2 cut(s) 23, 315
BslI CCNNNNNNNGG 3 cut(s) 152, 233, 234
BsmAI GTCTC 3 cut(s) 11, 282, 422
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 23, 315
BsmI GAATGC 2 cut(s) 163, 461
BsnI GGCC 2 cut(s) 380, 500
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 123, 241
Bsp143I GATC 2 cut(s) 129, 170
BspACI CCGC 3 cut(s) 264, 346, 377
BspANI GGCC 2 cut(s) 380, 500
BspCNI CTCAG 2 cut(s) 7, 135
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 3 cut(s) 11, 12, 172
BspPI GGATC 2 cut(s) 165, 178
BspTI CTTAAG 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 234, 334
BssMI GATC 2 cut(s) 129, 170
Bst2UI CCWGG 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 3 cut(s) 15, 122, 211
BstF5I GGATG 5 cut(s) 107, 406, 479, 553, 609
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 2 cut(s) 318, 410
BstKTI GATC 2 cut(s) 132, 173
BstMAI GTCTC 3 cut(s) 11, 282, 422
BstMBI GATC 2 cut(s) 129, 170
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 3 cut(s) 105, 233, 334
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 541
BstX2I RGATCY 2 cut(s) 129, 170
BstYI RGATCY 2 cut(s) 129, 170
BsuRI GGCC 2 cut(s) 380, 500
BtsCI GGATG 5 cut(s) 107, 406, 479, 553, 609
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 241
CciI TCATGA 1 cut(s) 609
CfoI GCGC 2 cut(s) 318, 410
Cfr13I GGNCC 1 cut(s) 10
CseI GACGC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 29, 297
CviAII CATG 2 cut(s) 32, 610
CviQI GTAC 2 cut(s) 29, 297
DdeI CTNAG 3 cut(s) 15, 122, 211
DpnI GATC 2 cut(s) 131, 172
DpnII GATC 2 cut(s) 129, 170
EaeI YGGCCR 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 60, 279
Eco88I CYCGRG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 334
EcoT22I ATGCAT 2 cut(s) 37, 165
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 2 cut(s) 35, 613
FaiI YATR 9 cut(s) 33, 143, 269, 406, 518, 536, 561, 611, 648
FaqI GGGAC 2 cut(s) 23, 315
FatI CATG 2 cut(s) 31, 609
Fnu4HI GCNGC 4 cut(s) 265, 346, 378, 555
FokI GGATG 5 cut(s) 114, 413, 466, 560, 616
Fsp4HI GCNGC 4 cut(s) 265, 346, 378, 555
FspBI CTAG 4 cut(s) 81, 246, 300, 386
FspI TGCGCA 1 cut(s) 409
GlaI GCGC 2 cut(s) 317, 409
GluI GCNGC 4 cut(s) 265, 346, 378, 555
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 402
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 380, 500
HapII CCGG 2 cut(s) 107, 234
HgaI GACGC 1 cut(s) 560
HhaI GCGC 2 cut(s) 318, 410
Hin1II CATG 2 cut(s) 35, 613
Hin6I GCGC 2 cut(s) 316, 408
HinP1I GCGC 2 cut(s) 316, 408
HinfI GANTC 4 cut(s) 53, 215, 359, 434
HpaII CCGG 2 cut(s) 107, 234
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 6 cut(s) 40, 125, 196, 220, 592, 622
Hpy188III TCNNGA 4 cut(s) 168, 202, 419, 610
Hpy8I GTNNAC 1 cut(s) 582
HpyAV CCTTC 4 cut(s) 156, 254, 287, 367
HpyCH4V TGCA 5 cut(s) 35, 163, 179, 459, 626
HpyF3I CTNAG 3 cut(s) 15, 122, 211
Hsp92II CATG 2 cut(s) 35, 613
HspAI GCGC 2 cut(s) 316, 408
KflI GGGWCCC 1 cut(s) 10
Kzo9I GATC 2 cut(s) 129, 170
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 5 cut(s) 44, 92, 188, 412, 613
MaeI CTAG 4 cut(s) 81, 246, 300, 386
MaeIII GTNAC 1 cut(s) 441
MalI GATC 2 cut(s) 131, 172
MboI GATC 2 cut(s) 129, 170
MboII GAAGA 6 cut(s) 53, 124, 429, 478, 521, 625
MflI RGATCY 2 cut(s) 129, 170
MhlI GDGCHC 2 cut(s) 123, 241
MluCI AATT 1 cut(s) 494
MlyI GAGTC 2 cut(s) 62, 224
MnlI CCTC 9 cut(s) 195, 200, 493, 511, 523, 532, 570, 591, 594
Mph1103I ATGCAT 2 cut(s) 37, 165
MseI TTAA 2 cut(s) 63, 326
MslI CAYNNNNRTG 1 cut(s) 614
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 2 cut(s) 107, 234
MspR9I CCNGG 3 cut(s) 107, 235, 336
Mva1269I GAATGC 2 cut(s) 163, 461
MvaI CCWGG 1 cut(s) 336
NciI CCSGG 2 cut(s) 107, 235
NdeII GATC 2 cut(s) 129, 170
NlaIII CATG 2 cut(s) 35, 613
NlaIV GGNNCC 3 cut(s) 11, 12, 172
NmeAIII GCCGAG 1 cut(s) 451
NsbI TGCGCA 1 cut(s) 409
NsiI ATGCAT 2 cut(s) 37, 165
NspI RCATGY 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 527
PagI TCATGA 1 cut(s) 609
PctI GAATGC 2 cut(s) 163, 461
PfeI GAWTC 2 cut(s) 359, 434
PkrI GCNGC 4 cut(s) 266, 347, 379, 556
PleI GAGTC 2 cut(s) 61, 223
PpsI GAGTC 2 cut(s) 61, 223
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 3 cut(s) 11, 12, 172
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
PspXI VCTCGAGB 1 cut(s) 527
PsuI RGATCY 2 cut(s) 129, 170
RsaI GTAC 2 cut(s) 30, 298
RsaNI GTAC 2 cut(s) 29, 297
RseI CAYNNNNRTG 1 cut(s) 614
SaqAI TTAA 2 cut(s) 63, 326
SatI GCNGC 4 cut(s) 265, 346, 378, 555
Sau3AI GATC 2 cut(s) 129, 170
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 2 cut(s) 62, 224
ScrFI CCNGG 3 cut(s) 107, 235, 336
SduI GDGCHC 2 cut(s) 123, 241
SfaNI GCATC 5 cut(s) 44, 92, 188, 412, 613
Sfr274I CTCGAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 62, 527
SmoI CTYRAG 2 cut(s) 62, 527
Sse9I AATT 1 cut(s) 494
SsiI CCGC 3 cut(s) 264, 346, 377
SspMI CTAG 4 cut(s) 81, 246, 300, 386
StyD4I CCNGG 3 cut(s) 105, 233, 334
TaqI TCGA 4 cut(s) 201, 371, 503, 528
TaqII GACCGA 1 cut(s) 35
TasI AATT 1 cut(s) 494
TauI GCSGC 3 cut(s) 267, 348, 380
TfiI GAWTC 2 cut(s) 359, 434
Tru1I TTAA 2 cut(s) 63, 326
Tru9I TTAA 2 cut(s) 63, 326
TscAI CASTG 1 cut(s) 181
TseI GCWGC 1 cut(s) 554
TspDTI ATGAA 3 cut(s) 468, 598, 626
TspRI CASTG 1 cut(s) 181
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 10
XceI RCATGY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 527
XspI CTAG 4 cut(s) 81, 246, 300, 386
Zsp2I ATGCAT 2 cut(s) 37, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.