Rw5G021850
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001153
Physical Location & Seq
Forward (+)
29785267 .. 29786221
955 bp
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UTR
Exon/CDS
Intron
Rw5G021850.1

Sequence Viewer

Length: 867 bp
ATGGCCTCTAATGAAGTGGAGATTGATGATAAAGCTGAATGGTCTACTAAGAATGAAGGAAAATTTATTCGTATTTTGCATGAGCATGTGAAAAAAGGAGATATGCAAACATCCACTTTCAAAAAGAAAATTTGGACTGAAATAAGTGATGAGTTGTTTGTTGAAACTACGAAAAGATACACTGTGGCACAACTCAAGTCTAAGTTCAATAGACTACGCAAAAAACACTGTGAATTTTCTGATTTGTTTGAGCATACTGGATTTGGATGGGACCCTATTGCAAACACTGTTACTGCATCAGAGGAAGTATGGGCTACTTATATTAAGAGAGTACCGGGAGTGAAGCCCTATCGTAAGAAAGGCTTGGAACATTATGAAACTTTAGGGGAAATATTCAATACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGCCAGCTCCCTCCCAATTCAGATGATGAGCGCAAGTTAGAGAATAAGTTTCTTAACAATGGAGTTCACATCAATCTTGATGAGGATTTCAATGTTAATAATACTCAAAATGAGATCAGAGGGAAAAGAAAAGCTGTGACAGAGGCTCCACCTTCAGAGCGTCGAACAAAAAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTGAAGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGCTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGAGACATTGATCATGCCACATTTATTAAAATGACGGATAAGCTTATAGTTGTTGAATGGAGGAGGCTTTTCCTTACCATGTCAAATGAAAGAAGGAGAGCTTGGCTAGCTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

288

Amino Acids

33.81

Weight (kDa)

7.7

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 13 - 107 1.5e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 44
AcsI RAATTY 4 cut(s) 62, 129, 233, 636
AcuI CTGAAG 2 cut(s) 573, 711
AfaI GTAC 2 cut(s) 333, 710
AgsI TTSAA 7 cut(s) 121, 164, 208, 397, 526, 719, 803
AjuI GAANNNNNNNTTGG 2 cut(s) 832, 864
AluBI AGCT 7 cut(s) 35, 442, 569, 664, 790, 848, 857
AluI AGCT 7 cut(s) 35, 442, 569, 664, 790, 848, 857
Alw26I GTCTC 1 cut(s) 744
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 4 cut(s) 62, 129, 233, 636
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 656
AsuNHI GCTAGC 1 cut(s) 853
AvaII GGWCC 1 cut(s) 271
BccI CCATC 1 cut(s) 261
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 744
BfaI CTAG 3 cut(s) 435, 854, 865
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 272, 273, 582
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 305
BmtI GCTAGC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bse1I ACTGG 1 cut(s) 262
BseGI GGATG 2 cut(s) 110, 272
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 823
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 2 cut(s) 284, 626
BsmAI GTCTC 1 cut(s) 744
BsmFI GGGAC 2 cut(s) 284, 626
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 549, 757
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 272, 273, 582
BspOI GCTAGC 1 cut(s) 857
BsrI ACTGG 1 cut(s) 262
BssMI GATC 2 cut(s) 549, 757
Bst4CI ACNGT 3 cut(s) 184, 230, 289
Bst6I CTCTTC 2 cut(s) 687, 714
BstC8I GCNNGC 2 cut(s) 440, 855
BstDEI CTNAG 3 cut(s) 48, 201, 631
BstF5I GGATG 2 cut(s) 110, 272
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 2 cut(s) 552, 760
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 2 cut(s) 549, 757
BstMWI GCNNNNNNNGC 1 cut(s) 854
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 334
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 110, 272
BtsIMutI CAGTG 3 cut(s) 180, 226, 285
Cac8I GCNNGC 2 cut(s) 440, 855
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 584
Csp6I GTAC 2 cut(s) 332, 709
CviAII CATG 4 cut(s) 80, 86, 761, 826
CviQI GTAC 2 cut(s) 332, 709
DdeI CTNAG 3 cut(s) 48, 201, 631
DpnI GATC 2 cut(s) 551, 759
DpnII GATC 2 cut(s) 549, 757
Eam1104I CTCTTC 2 cut(s) 687, 714
EarI CTCTTC 2 cut(s) 687, 714
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 573, 711
EcoO109I RGGNCCY 1 cut(s) 271
FaeI CATG 4 cut(s) 83, 89, 764, 829
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 832, 864
FaqI GGGAC 2 cut(s) 284, 626
FatI CATG 4 cut(s) 79, 85, 760, 825
FbaI TGATCA 1 cut(s) 757
FblI GTMKAC 1 cut(s) 44
FokI GGATG 2 cut(s) 97, 279
FspBI CTAG 3 cut(s) 435, 854, 865
GlaI GCGC 1 cut(s) 467
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 584
HhaI GCGC 1 cut(s) 468
Hin1II CATG 4 cut(s) 83, 89, 764, 829
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 788
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 3 cut(s) 45, 419, 502
Hpy188I TCNGA 5 cut(s) 241, 301, 457, 554, 592
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 3 cut(s) 45, 419, 502
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 3 cut(s) 50, 597, 834
HpyCH4III ACNGT 3 cut(s) 184, 230, 289
HpyCH4V TGCA 6 cut(s) 79, 106, 281, 296, 410, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 854
HpyF3I CTNAG 3 cut(s) 48, 201, 631
Hsp92II CATG 4 cut(s) 83, 89, 764, 829
HspAI GCGC 1 cut(s) 466
KflI GGGWCCC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 2 cut(s) 549, 757
LmnI GCTCC 2 cut(s) 447, 586
LpnPI CCDG 3 cut(s) 243, 348, 452
LweI GCATC 1 cut(s) 305
MaeI CTAG 3 cut(s) 435, 854, 865
MaeIII GTNAC 2 cut(s) 289, 571
MalI GATC 2 cut(s) 551, 759
MboI GATC 2 cut(s) 549, 757
MboII GAAGA 2 cut(s) 704, 731
MluCI AATT 6 cut(s) 62, 129, 233, 451, 636, 732
MnlI CCTC 9 cut(s) 16, 295, 442, 456, 511, 548, 571, 801, 804
MseI TTAA 4 cut(s) 324, 489, 531, 774
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 854
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 549, 757
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 4 cut(s) 83, 89, 764, 829
NlaIV GGNNCC 3 cut(s) 272, 273, 582
NmuCI GTSAC 1 cut(s) 571
NspI RCATGY 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspN4I GGNNCC 3 cut(s) 272, 273, 582
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 333, 710
RsaNI GTAC 2 cut(s) 332, 709
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 4 cut(s) 324, 489, 531, 774
Sau3AI GATC 2 cut(s) 549, 757
Sau96I GGNCC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 336
SetI ASST 8 cut(s) 37, 444, 571, 589, 666, 792, 850, 859
SfaNI GCATC 1 cut(s) 305
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 6 cut(s) 62, 129, 233, 451, 636, 732
SspI AATATT 1 cut(s) 393
SspMI CTAG 3 cut(s) 435, 854, 865
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 184, 230, 289
TaqI TCGA 1 cut(s) 598
TasI AATT 6 cut(s) 62, 129, 233, 451, 636, 732
TatI WGTACW 1 cut(s) 708
Tru1I TTAA 4 cut(s) 324, 489, 531, 774
Tru9I TTAA 4 cut(s) 324, 489, 531, 774
TscAI CASTG 3 cut(s) 187, 233, 292
TseFI GTSAC 1 cut(s) 571
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 5 cut(s) 27, 69, 390, 668, 849
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 3 cut(s) 187, 233, 292
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 4 cut(s) 62, 129, 233, 636
XceI RCATGY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 3 cut(s) 435, 854, 865
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.