Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

22884691 .. 22908852

Gene Structure 24162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTGGTCTCCGTCGACGATTCTCACTCACGGCGGCGCTGCAAGGCTGCACGGTTGGAGGAAGCACGACCCGGCCGGAAAATGCAGCTCGACCGACCTTGCTTCGGTGGTTTGGAGAAAAACATTCGTGGTAGAGTTCCACAAAACTCTGATGAGGAGCGTCGATTAGTGCATAGATTTCTAAACACGGGTGTCCACGTAAAGATTCATGATAAAGTTGATGATGTAGATGTCATTAATATTGATGGAGAATGTGATGGAGGTAAAGGAAAAAGGAAATCTACAACTGATGCCCCTTCTTCATATGATCACAAGCCAAAGAAATGGGAAAAATTGGAGAGTTATTTGGATGTTTGTAGTGAAGTCATGGCTGAAAAATTGAAGCACCAAAATGACAAAAGTACGGAGGCAACTAGCAATTTAAAAGAGATGTATTCAATTGTAGAGTGTATGGAAGTTGTGGAGGAAATGGGAGACTTTGAGCATACGACTTTCATAAAGATGATGGATAAAATTGTAACTCTTGAGTGGAGGAAAATTTTTCTTAAAATGTCGGATGCAAGGAGAAGGGCTTCGTTAGCTAATAGGCTCCGAGAAGATGAGGATGGATATGTGAAAGGACATTGTAGCTATAGACGGGGTCAACGACATGTAGTTTGTGCATTATCTTCTCGGGCTCAAACTACTTGTCCAAGTTCATCCGGCTCCCGTGTTGAGAGTGCTTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTTCCTGGTTGTGTTGATGTGCCTTTATCAAAGAGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

270

Amino Acids

31.12

Weight (kDa)

8.66

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	537
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	2 cut(s)	382, 438
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	3 cut(s)	88, 581, 630
AluI	AGCT	3 cut(s)	88, 581, 630
Alw26I	GTCTC	2 cut(s)	13, 468
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	3 cut(s)	39, 47, 85
ApoI	RAATTY	1 cut(s)	537
ArsI	GACNNNNNNTTYG	4 cut(s)	639, 671, 673, 705
AseI	ATTAAT	2 cut(s)	237, 731
Asp700I	GAANNNNTTC	2 cut(s)	571, 770
AspLEI	GCGC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	679
BbvI	GCAGC	3 cut(s)	26, 34, 97
BccI	CCATC	4 cut(s)	239, 251, 499, 599
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	776
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	13, 468
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	631
BfoI	RGCGCY	1 cut(s)	40
BisI	GCNGC	4 cut(s)	35, 40, 48, 86
BlsI	GCNGC	4 cut(s)	36, 41, 49, 87
Bme1390I	CCNGG	2 cut(s)	72, 776
BmeT110I	CYCGRG	1 cut(s)	672
BmiI	GGNNCC	2 cut(s)	590, 706
BmrFI	CCNGG	2 cut(s)	72, 776
BmsI	GCATC	2 cut(s)	280, 547
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	776
BseGI	GGATG	4 cut(s)	355, 562, 610, 698
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	26, 34, 97
BsgI	GTGCAG	1 cut(s)	33
Bsh1285I	CGRYCG	2 cut(s)	76, 94
BshFI	GGCC	1 cut(s)	75
BsiEI	CGRYCG	2 cut(s)	76, 94
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	3 cut(s)	72, 76, 702
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	13, 468
BsnI	GGCC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	590, 706
BspTNI	GGTCTC	1 cut(s)	13
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	199
BstF5I	GGATG	4 cut(s)	355, 562, 610, 698
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	13, 468
BstMBI	GATC	1 cut(s)	307
BstMCI	CGRYCG	2 cut(s)	76, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	70, 774
BstSFI	CTRYAG	1 cut(s)	631
BstV1I	GCAGC	3 cut(s)	26, 34, 97
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	355, 562, 610, 698
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	39
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	4 cut(s)	209, 367, 650, 740
CviQI	GTAC	1 cut(s)	402
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraI	TTTAAA	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	73
EagI	CGGCCG	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	1 cut(s)	13
Eco52I	CGGCCG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	679
FaeI	CATG	4 cut(s)	212, 370, 653, 743
FatI	CATG	4 cut(s)	208, 366, 649, 739
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	35, 40, 48, 86
FokI	GGATG	4 cut(s)	362, 569, 617, 685
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	4 cut(s)	35, 40, 48, 86
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	4 cut(s)	35, 40, 48, 86
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	3 cut(s)	72, 76, 702
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	212, 370, 653, 743
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	2 cut(s)	16, 644
HindII	GTYRAC	2 cut(s)	16, 644
HinfI	GANTC	3 cut(s)	20, 205, 746
HpaII	CCGG	3 cut(s)	72, 76, 702
Hpy166II	GTNNAC	3 cut(s)	16, 196, 644
Hpy188I	TCNGA	3 cut(s)	151, 556, 593
Hpy188III	TCNNGA	2 cut(s)	209, 524
Hpy8I	GTNNAC	3 cut(s)	16, 196, 644
Hpy99I	CGWCG	3 cut(s)	17, 20, 165
HpyAV	CCTTC	2 cut(s)	306, 561
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	6 cut(s)	42, 50, 85, 172, 560, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	212, 370, 653, 743
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	157, 594, 710
LpnPI	CCDG	5 cut(s)	85, 89, 715, 761, 788
Lsp1109I	GCAGC	3 cut(s)	26, 34, 97
LweI	GCATC	2 cut(s)	280, 547
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	291, 608, 660, 775
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	7 cut(s)	332, 377, 418, 438, 513, 537, 732
MmeI	TCCRAC	2 cut(s)	36, 534
MnlI	CCTC	8 cut(s)	52, 148, 254, 400, 457, 525, 595, 799
MroXI	GAANNNNTTC	2 cut(s)	571, 770
MseI	TTAA	4 cut(s)	237, 422, 546, 731
MslI	CAYNNNNRTG	2 cut(s)	390, 500
MspI	CCGG	3 cut(s)	72, 76, 702
MspR9I	CCNGG	2 cut(s)	72, 776
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	4 cut(s)	212, 370, 653, 743
NlaIV	GGNNCC	2 cut(s)	590, 706
NspI	RCATGY	1 cut(s)	653
PagI	TCATGA	1 cut(s)	208
PciI	ACATGT	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	643
PdmI	GAANNNNTTC	2 cut(s)	571, 770
PfeI	GAWTC	3 cut(s)	20, 205, 746
PflFI	GACNNNGTC	1 cut(s)	639
PkrI	GCNGC	4 cut(s)	36, 41, 49, 87
Ppu21I	YACGTR	1 cut(s)	199
PscI	ACATGT	1 cut(s)	649
PshBI	ATTAAT	2 cut(s)	237, 731
Psp6I	CCWGG	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	2 cut(s)	590, 706
PsyI	GACNNNGTC	1 cut(s)	639
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	2 cut(s)	390, 500
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	237, 422, 546, 731
SatI	GCNGC	4 cut(s)	35, 40, 48, 86
Sau3AI	GATC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	72, 776
SduI	GDGCHC	1 cut(s)	679
SetI	ASST	7 cut(s)	90, 100, 201, 265, 583, 632, 810
SfaNI	GCATC	2 cut(s)	280, 547
SfcI	CTRYAG	1 cut(s)	631
SgrDI	CGTCGACG	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	390, 500
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	7 cut(s)	332, 377, 418, 438, 513, 537, 732
SsiI	CCGC	1 cut(s)	34
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	70, 774
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	15, 90, 163
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	332, 377, 418, 438, 513, 537, 732
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	3 cut(s)	20, 205, 746
Tru1I	TTAA	4 cut(s)	237, 422, 546, 731
Tru9I	TTAA	4 cut(s)	237, 422, 546, 731
TseI	GCWGC	3 cut(s)	39, 47, 85
TspDTI	ATGAA	4 cut(s)	197, 291, 484, 687
TspGWI	ACGGA	1 cut(s)	419
Tth111I	GACNNNGTC	1 cut(s)	639
VspI	ATTAAT	2 cut(s)	237, 731
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	2 cut(s)	571, 770
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.