RLG00000035605
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
69262590 .. 69263544
955 bp
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UTR
Exon/CDS
Intron
RLM00000035605

Sequence Viewer

Length: 627 bp
ATGGCATCTAATGAAGTGGAGATTGATGATAAAGCTGAATGGTCTGCTAAGAATGAAGGAAAATTTATTCGTATTTTGCATGAGCATAGAGTACCGGGAGTGAAGCCCTATCGTAAGAAAGGCTTGGAACATTATGAAACTTTAGGGGAAATATTCAATACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGCCAGCTCCCTCCCAATTCAGATGATGAGCGCGAGTTAGAGAATAAGTTTCTTAACAATGGAGTTCACATCAATCTTGATGAGGATTTTGATGTTAATAATACTCAAAATGAGATCAGAGGGAAAAGAAAGGCTGTGACAGAGGCTCCACCTTCAGAGCGTCGAACAAAAAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTGAAGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGCTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGAGACATTGATCATGCCACATTTATTAAAATGATGGATAAGCTTATAGTTGTTGAATGGAGGAGGCTTTTCCTTACCATGTCAAATGAAAGAAGGAGAGCTTGGCTAGCTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

209

Amino Acids

24.41

Weight (kDa)

5.79

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AcsI RAATTY 2 cut(s) 62, 396
AcuI CTGAAG 2 cut(s) 333, 471
AfaI GTAC 2 cut(s) 93, 470
AgsI TTSAA 3 cut(s) 157, 479, 563
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 6 cut(s) 35, 202, 424, 550, 608, 617
AluI AGCT 6 cut(s) 35, 202, 424, 550, 608, 617
Alw26I GTCTC 1 cut(s) 504
ApoI RAATTY 2 cut(s) 62, 396
AspLEI GCGC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 613
BccI CCATC 1 cut(s) 535
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 3 cut(s) 195, 614, 625
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpuMI CCSGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
BseRI GAGGAG 1 cut(s) 583
Bsh1236I CGCG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 386
Bsp143I GATC 2 cut(s) 309, 517
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 342
BspOI GCTAGC 1 cut(s) 617
BssMI GATC 2 cut(s) 309, 517
Bst6I CTCTTC 2 cut(s) 447, 474
BstC8I GCNNGC 2 cut(s) 200, 615
BstDEI CTNAG 2 cut(s) 48, 391
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 312, 520
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 2 cut(s) 309, 517
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 94
BstUI CGCG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 200, 615
CfoI GCGC 1 cut(s) 228
CseI GACGC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 92, 469
CviAII CATG 3 cut(s) 80, 521, 586
CviQI GTAC 2 cut(s) 92, 469
DdeI CTNAG 2 cut(s) 48, 391
DpnI GATC 2 cut(s) 311, 519
DpnII GATC 2 cut(s) 309, 517
Eam1104I CTCTTC 2 cut(s) 447, 474
EarI CTCTTC 2 cut(s) 447, 474
Eco57I CTGAAG 2 cut(s) 333, 471
FaeI CATG 3 cut(s) 83, 524, 589
FaiI YATR 7 cut(s) 81, 87, 135, 189, 522, 554, 587
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 592, 624
FaqI GGGAC 1 cut(s) 386
FatI CATG 3 cut(s) 79, 520, 585
FbaI TGATCA 1 cut(s) 517
FspBI CTAG 3 cut(s) 195, 614, 625
GlaI GCGC 1 cut(s) 227
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 228
Hin1II CATG 3 cut(s) 83, 524, 589
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 548
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 179, 262
Hpy188I TCNGA 3 cut(s) 217, 314, 352
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 179, 262
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 3 cut(s) 50, 357, 594
HpyCH4V TGCA 3 cut(s) 79, 170, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 2 cut(s) 48, 391
Hsp92II CATG 3 cut(s) 83, 524, 589
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 309, 517
LmnI GCTCC 2 cut(s) 207, 346
LpnPI CCDG 2 cut(s) 108, 212
LweI GCATC 1 cut(s) 14
MaeI CTAG 3 cut(s) 195, 614, 625
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 311, 519
MboI GATC 2 cut(s) 309, 517
MboII GAAGA 2 cut(s) 464, 491
MluCI AATT 4 cut(s) 62, 211, 396, 492
MnlI CCTC 7 cut(s) 202, 216, 271, 308, 331, 561, 564
MseI TTAA 3 cut(s) 249, 291, 534
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 1 cut(s) 96
NdeII GATC 2 cut(s) 309, 517
NheI GCTAGC 1 cut(s) 613
NlaIII CATG 3 cut(s) 83, 524, 589
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 342
RsaI GTAC 2 cut(s) 93, 470
RsaNI GTAC 2 cut(s) 92, 469
SaqAI TTAA 3 cut(s) 249, 291, 534
Sau3AI GATC 2 cut(s) 309, 517
ScaI AGTACT 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 96
SetI ASST 7 cut(s) 37, 204, 349, 426, 552, 610, 619
SfaNI GCATC 1 cut(s) 14
Sse9I AATT 4 cut(s) 62, 211, 396, 492
SspI AATATT 1 cut(s) 153
SspMI CTAG 3 cut(s) 195, 614, 625
StyD4I CCNGG 1 cut(s) 94
TaqI TCGA 1 cut(s) 358
TasI AATT 4 cut(s) 62, 211, 396, 492
TatI WGTACW 1 cut(s) 468
Tru1I TTAA 3 cut(s) 249, 291, 534
Tru9I TTAA 3 cut(s) 249, 291, 534
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 5 cut(s) 27, 69, 150, 428, 609
XapI RAATTY 2 cut(s) 62, 396
XspI CTAG 3 cut(s) 195, 614, 625
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.