Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Forward (+)

35433673 .. 35436040

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1270400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTGTTGGGACCCTGAGTCCGACAAGGTACATGCATCTAAAGAAGTTTGGGAGTCCTACCTTAAGAAAAACAAGTTTGCTAGTCGCTTTCGTAGGAAGGGATGCCCGCAGTATCAAGTGCTTGGAGAGATCTTCAACCACATACCTTCTAATGGACAAATGCATTCTGGATCCATTGCTTCTCTTCCAAACTCTGATGTCGAGAGAGGTTTAGAGTCCGAGTTTCCCAGCTTCGGGGCACACTATAGCCCTGATACTGAAGGCGGCATAGATACTAAAAATAAAGGAGACGAAGGTAATAGCAAGACCCAAAAGCGCCGTCCTTTAAGTCCCCCAGGTTATTGCCGCACAAGAAAGGAATCAAGGACATCGAAGGCGGCCAAGCTAGGTGATGGAGTGGAAGTATGCGCAGTATCTCCAGATGCCGAGACTGAATCTTCGTTACCAAAGGTTGAATACAGAAAGAAGAGCGATTTTTCATCCCCTTTTAGAGAATTGGCCTCGATTGAAGATTGTATGGAAGTACTCGAGTCTATGGAGGATCTGGATGACGCCGCCTATGTTAGAGCGTGTGAGAGGTTTACGAGTTCGGATTGGAGGAGGATGTTCATGAAGATGTCTGATGCAAGGAAAAGAATGTGGCTGTATAGCCTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 Myb_DNA-bind_3

Protein Analysis

220

Amino Acids

24.93

Weight (kDa)

7.58

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	409
AciI	CCGC	5 cut(s)	107, 264, 346, 377, 555
AclWI	GGATC	3 cut(s)	165, 178, 549
AcoI	YGGCCR	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	2 cut(s)	30, 525
AfiI	CCNNNNNNNGG	3 cut(s)	152, 233, 234
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	136, 455, 509
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	231, 385
AluI	AGCT	2 cut(s)	231, 385
Alw26I	GTCTC	2 cut(s)	282, 422
AlwI	GGATC	3 cut(s)	165, 178, 549
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	378, 498
ArsI	GACNNNNNNTTYG	4 cut(s)	304, 336, 421, 453
AspLEI	GCGC	2 cut(s)	318, 410
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	170
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	2 cut(s)	282, 422
BfaI	CTAG	2 cut(s)	81, 386
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	319
BfrI	CTTAAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	4 cut(s)	265, 346, 378, 555
BlsI	GCNGC	4 cut(s)	266, 347, 379, 556
BmcAI	AGTACT	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	10
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	3 cut(s)	11, 12, 172
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	4 cut(s)	44, 92, 412, 613
BpmI	CTGGAG	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 233, 234
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	4 cut(s)	107, 479, 553, 609
BseLI	CCNNNNNNNGG	3 cut(s)	152, 233, 234
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	613
BseSI	GKGCMC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	227
BshFI	GGCC	2 cut(s)	380, 500
BsiHKCI	CYCGRG	1 cut(s)	527
BslFI	GGGAC	2 cut(s)	23, 315
BslI	CCNNNNNNNGG	3 cut(s)	152, 233, 234
BsmAI	GTCTC	2 cut(s)	282, 422
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	23, 315
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	380, 500
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	129, 170, 541
BspACI	CCGC	5 cut(s)	107, 264, 346, 377, 555
BspANI	GGCC	2 cut(s)	380, 500
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	3 cut(s)	11, 12, 172
BspPI	GGATC	3 cut(s)	165, 178, 549
BspQI	GCTCTTC	1 cut(s)	461
BspTI	CTTAAG	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	3 cut(s)	129, 170, 541
BssNI	GRCGYC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	336
Bst6I	CTCTTC	2 cut(s)	189, 461
BstACI	GRCGYC	1 cut(s)	552
BstAFI	CTTAAG	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	107, 479, 553, 609
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	2 cut(s)	318, 410
BstKTI	GATC	3 cut(s)	132, 173, 544
BstMAI	GTCTC	2 cut(s)	282, 422
BstMBI	GATC	3 cut(s)	129, 170, 541
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	241
BstX2I	RGATCY	3 cut(s)	129, 170, 541
BstYI	RGATCY	3 cut(s)	129, 170, 541
BsuRI	GGCC	2 cut(s)	380, 500
BtsCI	GGATG	4 cut(s)	107, 479, 553, 609
Cac8I	GCNNGC	1 cut(s)	107
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	2 cut(s)	318, 410
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	29, 524
CviAII	CATG	2 cut(s)	32, 610
CviJI	RGCY	7 cut(s)	231, 249, 380, 385, 500, 643, 651
CviKI_1	RGCY	7 cut(s)	231, 249, 380, 385, 500, 643, 651
CviQI	GTAC	2 cut(s)	29, 524
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	131, 172, 543
DpnII	GATC	3 cut(s)	129, 170, 541
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	2 cut(s)	189, 461
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EarI	CTCTTC	2 cut(s)	189, 461
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	334
EcoT22I	ATGCAT	2 cut(s)	37, 165
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	35, 613
FaqI	GGGAC	2 cut(s)	23, 315
FatI	CATG	2 cut(s)	31, 609
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	265, 346, 378, 555
FokI	GGATG	4 cut(s)	114, 466, 560, 616
Fsp4HI	GCNGC	4 cut(s)	265, 346, 378, 555
FspBI	CTAG	2 cut(s)	81, 386
FspI	TGCGCA	1 cut(s)	409
GlaI	GCGC	2 cut(s)	317, 409
GluI	GCNGC	4 cut(s)	265, 346, 378, 555
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	380, 500
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	318, 410
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	2 cut(s)	35, 613
Hin6I	GCGC	2 cut(s)	316, 408
HinP1I	GCGC	2 cut(s)	316, 408
HinfI	GANTC	6 cut(s)	17, 53, 215, 359, 434, 530
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	5 cut(s)	22, 196, 220, 592, 622
Hpy188III	TCNNGA	5 cut(s)	168, 202, 419, 545, 610
Hpy8I	GTNNAC	1 cut(s)	582
HpyAV	CCTTC	5 cut(s)	91, 156, 254, 287, 367
HpyCH4V	TGCA	3 cut(s)	35, 163, 626
HpyF3I	CTNAG	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	35, 613
HspAI	GCGC	2 cut(s)	316, 408
KflI	GGGWCCC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	129, 170, 541
LguI	GCTCTTC	1 cut(s)	461
LpnPI	CCDG	8 cut(s)	27, 153, 241, 264, 321, 348, 432, 530
LweI	GCATC	4 cut(s)	44, 92, 412, 613
MaeI	CTAG	2 cut(s)	81, 386
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	3 cut(s)	131, 172, 543
MboI	GATC	3 cut(s)	129, 170, 541
MboII	GAAGA	6 cut(s)	124, 176, 429, 478, 521, 625
MflI	RGATCY	3 cut(s)	129, 170, 541
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	494
MlyI	GAGTC	4 cut(s)	26, 62, 224, 539
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	200, 511, 532, 570, 591, 594
Mph1103I	ATGCAT	2 cut(s)	37, 165
MseI	TTAA	2 cut(s)	63, 326
MslI	CAYNNNNRTG	1 cut(s)	614
MspCI	CTTAAG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	129, 170, 541
NlaIII	CATG	2 cut(s)	35, 613
NlaIV	GGNNCC	3 cut(s)	11, 12, 172
NmeAIII	GCCGAG	1 cut(s)	451
NsbI	TGCGCA	1 cut(s)	409
NsiI	ATGCAT	2 cut(s)	37, 165
NspI	RCATGY	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	527
PagI	TCATGA	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	461
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	359, 434
PkrI	GCNGC	4 cut(s)	266, 347, 379, 556
PleI	GAGTC	4 cut(s)	25, 61, 223, 538
PpsI	GAGTC	4 cut(s)	25, 61, 223, 538
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	11, 12, 172
PspPI	GGNCC	1 cut(s)	10
PspPPI	RGGWCCY	1 cut(s)	10
PspXI	VCTCGAGB	1 cut(s)	527
PsuI	RGATCY	3 cut(s)	129, 170, 541
RsaI	GTAC	2 cut(s)	30, 525
RsaNI	GTAC	2 cut(s)	29, 524
RseI	CAYNNNNRTG	1 cut(s)	614
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	63, 326
SatI	GCNGC	4 cut(s)	265, 346, 378, 555
Sau3AI	GATC	3 cut(s)	129, 170, 541
Sau96I	GGNCC	1 cut(s)	10
ScaI	AGTACT	1 cut(s)	525
SchI	GAGTC	4 cut(s)	26, 62, 224, 539
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	4 cut(s)	44, 92, 412, 613
SfcI	CTRYAG	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	62, 527
SmoI	CTYRAG	2 cut(s)	62, 527
Sse9I	AATT	1 cut(s)	494
SsiI	CCGC	5 cut(s)	107, 264, 346, 377, 555
SspMI	CTAG	2 cut(s)	81, 386
StyD4I	CCNGG	1 cut(s)	334
TaqI	TCGA	4 cut(s)	201, 371, 503, 528
TasI	AATT	1 cut(s)	494
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	4 cut(s)	267, 348, 380, 557
TfiI	GAWTC	2 cut(s)	359, 434
Tru1I	TTAA	2 cut(s)	63, 326
Tru9I	TTAA	2 cut(s)	63, 326
TspDTI	ATGAA	3 cut(s)	468, 598, 626
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	10
XceI	RCATGY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	527
XspI	CTAG	2 cut(s)	81, 386
ZrmI	AGTACT	1 cut(s)	525
Zsp2I	ATGCAT	2 cut(s)	37, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.