Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

20025966 .. 20026593

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G193000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

TTCTCGGACCTAATTGAGCATACTGGATTTGGGTGGGATCCTAATGCTAACACAGTCACTGCCTCAGAGGATGTTTGGGCTAGTTACATTAAGAGTAAGCCAAGAGCAAAGCAATATCGCACTCACGGTTTAGTGCACTATCAGCTTTTAGAGGAGATATTCAACACCACTACTGCAACCGGTCAGTTGCGTTATGCCTCTAATCAACTTCCTCCTAACTCAGATGAGGAGCATGAGTTAGAAAATAATTTCCTTAACACTGGTGTTCATATTGATGTTGACTTGGATGATGATGGTGTTAACTTGGAAACTGATCATGGTAAAGGAAAAAGAAAGAGTGTAACTGCTACCCCACCCGAGCGTTGTCCAAAGAAATGGCATAAAATAGAATCCTATTTGGAGGTTTGCAGTGAAGTTATGAGTCAAAGATTGCAAACAATTCAAAAGGAAAAGAGTGTTGAGGCATCTAGCACCTCCAATGAGATGTATTCTATTGAAGAATGCATCGGAATTGTTGAAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

176

Amino Acids

19.86

Weight (kDa)

4.9

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	32, 45
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	163, 443, 497, 518
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	32, 45
AlwNI	CAGNNNCTG	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	356
ApaLI	GTGCAC	1 cut(s)	134
AsiGI	ACCGGT	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	1 cut(s)	287
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	2 cut(s)	81, 468
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	473, 513
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	28, 265
BseGI	GGATG	2 cut(s)	76, 292
BseMII	CTCAG	2 cut(s)	78, 234
BseNI	ACTGG	2 cut(s)	28, 265
BseRI	GAGGAG	2 cut(s)	167, 242
BseSI	GKGCMC	1 cut(s)	138
BshTI	ACCGGT	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	506
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	37, 313
BspCNI	CTCAG	2 cut(s)	77, 233
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	32, 45
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	28, 265
BssAI	RCCGGY	1 cut(s)	179
BssMI	GATC	2 cut(s)	37, 313
Bst4CI	ACNGT	2 cut(s)	55, 128
BstDEI	CTNAG	2 cut(s)	64, 220
BstF5I	GGATG	2 cut(s)	76, 292
BstKTI	GATC	2 cut(s)	40, 316
BstMBI	GATC	2 cut(s)	37, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	76, 292
BtsI	GCAGTG	2 cut(s)	57, 415
BtsIMutI	CAGTG	3 cut(s)	57, 258, 415
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	2 cut(s)	233, 317
CviJI	RGCY	3 cut(s)	80, 100, 145
CviKI_1	RGCY	3 cut(s)	80, 100, 145
DdeI	CTNAG	2 cut(s)	64, 220
DpnI	GATC	2 cut(s)	39, 315
DpnII	GATC	2 cut(s)	37, 313
Eco47I	GGWCC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	356
EcoT22I	ATGCAT	1 cut(s)	506
FaeI	CATG	2 cut(s)	236, 320
FaiI	YATR	8 cut(s)	21, 195, 234, 270, 318, 381, 419, 526
FatI	CATG	2 cut(s)	232, 316
FbaI	TGATCA	1 cut(s)	313
FokI	GGATG	2 cut(s)	83, 299
FspBI	CTAG	2 cut(s)	81, 468
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	236, 320
HincII	GTYRAC	2 cut(s)	280, 301
HindII	GTYRAC	2 cut(s)	280, 301
HinfI	GANTC	2 cut(s)	389, 421
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	3 cut(s)	136, 280, 301
Hpy188I	TCNGA	4 cut(s)	7, 67, 223, 509
Hpy8I	GTNNAC	3 cut(s)	136, 280, 301
HpyCH4III	ACNGT	2 cut(s)	55, 128
HpyCH4V	TGCA	5 cut(s)	136, 176, 408, 433, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	64, 220
Hsp92II	CATG	2 cut(s)	236, 320
Ksp22I	TGATCA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	37, 313
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	9, 193, 246
LweI	GCATC	2 cut(s)	473, 513
MaeI	CTAG	2 cut(s)	81, 468
MaeIII	GTNAC	3 cut(s)	55, 83, 340
MalI	GATC	2 cut(s)	39, 315
MboI	GATC	2 cut(s)	37, 313
MboII	GAAGA	1 cut(s)	509
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	4 cut(s)	12, 247, 438, 510
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	9 cut(s)	61, 73, 145, 208, 220, 222, 394, 454, 484
Mph1103I	ATGCAT	1 cut(s)	506
MseI	TTAA	3 cut(s)	90, 255, 300
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	2 cut(s)	37, 313
NlaIII	CATG	2 cut(s)	236, 320
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	506
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	389
PinAI	ACCGGT	1 cut(s)	179
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	90, 255, 300
Sau3AI	GATC	2 cut(s)	37, 313
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	4 cut(s)	12, 147, 405, 476
SfaNI	GCATC	2 cut(s)	473, 513
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	4 cut(s)	12, 247, 438, 510
SspMI	CTAG	2 cut(s)	81, 468
TaaI	ACNGT	2 cut(s)	55, 128
TasI	AATT	4 cut(s)	12, 247, 438, 510
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	3 cut(s)	90, 255, 300
Tru9I	TTAA	3 cut(s)	90, 255, 300
TscAI	CASTG	3 cut(s)	64, 265, 415
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	64, 265, 415
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	7
XspI	CTAG	2 cut(s)	81, 468
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.