RLG00000001198
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
11803310 .. 11804228
919 bp
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UTR
Exon/CDS
Intron
RLM00000001198

Sequence Viewer

Length: 591 bp
ATGGCCTCTAATGAAGTGGAGATTGATGATAAAGCTGAATGGTCTGCTAAGAATGAAGGAAAATTTATTCGTATTTTGCATGAGCATAGAGTACGGAGAGTGAAGCCCTATCGTAAGAAAAGCTTGGAACATTATGAAACTTCAGGGGAAATATTCAATACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGTCAGCTCCCTCCCAATTCAAATGATGAGCGCGAGTTAGAGAATAAGTTTCTTAACAATGGAGTTCACATCAATCTTGATGAGGGTTTCAATGTTAATAATACTCAAAATGAGATCAGAGGGAAAAGAAAAGCTGTGACAGAGGCTTCACCTTCAGAGTGTCGAACAAAAAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTGAAGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGCCGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGAGGAAACATTGGGAGACATTGATCATGCCACATTTATTAAAATGATGGATAAGCTTATAGTTGTTGAATGGAGGAGGCTTTTCCTTACCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

23.01

Weight (kDa)

5.95

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AcsI RAATTY 2 cut(s) 62, 396
AcuI CTGAAG 2 cut(s) 126, 333
AfaI GTAC 2 cut(s) 93, 470
AgsI TTSAA 5 cut(s) 157, 216, 286, 479, 563
AluBI AGCT 6 cut(s) 35, 123, 202, 329, 424, 550
AluI AGCT 6 cut(s) 35, 123, 202, 329, 424, 550
Alw26I GTCTC 1 cut(s) 504
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 62, 396
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 336, 416
BccI CCATC 1 cut(s) 535
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 1 cut(s) 195
BmcAI AGTACT 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BseRI GAGGAG 1 cut(s) 583
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 309, 517
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 228
BssMI GATC 2 cut(s) 309, 517
Bst6I CTCTTC 2 cut(s) 447, 474
BstDEI CTNAG 2 cut(s) 48, 391
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 312, 520
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 2 cut(s) 309, 517
BstUI CGCG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 92, 469
CviAII CATG 3 cut(s) 80, 521, 586
CviQI GTAC 2 cut(s) 92, 469
DdeI CTNAG 2 cut(s) 48, 391
DpnI GATC 2 cut(s) 311, 519
DpnII GATC 2 cut(s) 309, 517
Eam1104I CTCTTC 2 cut(s) 447, 474
EarI CTCTTC 2 cut(s) 447, 474
Eco57I CTGAAG 2 cut(s) 126, 333
FaeI CATG 3 cut(s) 83, 524, 589
FaiI YATR 7 cut(s) 81, 87, 135, 189, 522, 554, 587
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 386
FatI CATG 3 cut(s) 79, 520, 585
FbaI TGATCA 1 cut(s) 517
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 228
Hin1II CATG 3 cut(s) 83, 524, 589
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HindIII AAGCTT 2 cut(s) 121, 548
HphI GGTGA 2 cut(s) 336, 416
Hpy166II GTNNAC 2 cut(s) 179, 262
Hpy188I TCNGA 2 cut(s) 314, 352
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 179, 262
HpyAV CCTTC 2 cut(s) 50, 357
HpyCH4V TGCA 3 cut(s) 79, 170, 490
HpyF3I CTNAG 2 cut(s) 48, 391
Hsp92II CATG 3 cut(s) 83, 524, 589
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 309, 517
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 1 cut(s) 129
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 311, 519
MboI GATC 2 cut(s) 309, 517
MboII GAAGA 2 cut(s) 464, 491
MluCI AATT 4 cut(s) 62, 211, 396, 492
MnlI CCTC 9 cut(s) 16, 202, 216, 271, 308, 331, 490, 561, 564
MseI TTAA 3 cut(s) 249, 291, 534
MvnI CGCG 1 cut(s) 228
NdeII GATC 2 cut(s) 309, 517
NlaIII CATG 3 cut(s) 83, 524, 589
NmuCI GTSAC 1 cut(s) 331
RsaI GTAC 2 cut(s) 93, 470
RsaNI GTAC 2 cut(s) 92, 469
SaqAI TTAA 3 cut(s) 249, 291, 534
Sau3AI GATC 2 cut(s) 309, 517
ScaI AGTACT 1 cut(s) 470
SetI ASST 7 cut(s) 37, 125, 204, 331, 349, 426, 552
SgeI CNNG 9 cut(s) 92, 136, 156, 186, 207, 239, 241, 284, 533
Sse9I AATT 4 cut(s) 62, 211, 396, 492
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 195
TaqI TCGA 1 cut(s) 358
TasI AATT 4 cut(s) 62, 211, 396, 492
TatI WGTACW 1 cut(s) 468
Tru1I TTAA 3 cut(s) 249, 291, 534
Tru9I TTAA 3 cut(s) 249, 291, 534
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 27, 69, 150, 428
TspGWI ACGGA 1 cut(s) 109
XapI RAATTY 2 cut(s) 62, 396
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.