Rh4BG219300
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
37977494 .. 37978051
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG219300.1

Sequence Viewer

Length: 558 bp
ATGAAGAAATTTCGGCTTAAAGGCTTACCCCACTATGAAACTCTAGGTGAAATATTCAACACCACTACTGCAACAGGTCAAATGCATTATGCATCTGGCCAAGTTCCACAAAACTCTGATGAGGAGCGTCAATTAGAGCATAGATTTCTAAACACTGGTGTTCACGTAAAGATTCATGATAAAGTTGATGATGTAGATGTCATTAATATTGATGGAGAATGTGATGGAGGTAAAGGAAAAAGGAAATCTACAACTGATGCCCCTTTTTCATATGATCGCAAGCCAAAGAAATGGGAAAAAATGGAGAGTTATTTGGATGTTTGTAGTGAAGTCATGGCTGAAAAATTGAAGCGCCAAAAGGACAAAAATACTGAGGCAACTAGCAATTTAAAAGAGATGTATTCAATTGAAGAGTGTATGGAAGTTGTGGAGGAAATGGGAGACATTGAGCATACGGCTTTCATAAAGATGATGGATAAAATTGTAACTCTTGAGTGGAGGAAAATTTTTCTTAAAATGTCGGATGCAAGGAGAAGGGCTTGGTTAGCTAGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

21.51

Weight (kDa)

6.33

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 8, 504
AgsI TTSAA 4 cut(s) 58, 349, 405, 410
AluBI AGCT 1 cut(s) 548
AluI AGCT 1 cut(s) 548
Alw26I GTCTC 1 cut(s) 435
AoxI GGCC 1 cut(s) 97
ApoI RAATTY 2 cut(s) 8, 504
AseI ATTAAT 1 cut(s) 204
AspLEI GCGC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 59
BalI TGGCCA 1 cut(s) 99
BccI CCATC 3 cut(s) 206, 218, 466
BceAI ACGGC 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 3 cut(s) 44, 381, 549
BfoI RGCGCY 1 cut(s) 355
BmsI GCATC 3 cut(s) 101, 247, 514
BpuEI CTTGAG 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 322, 529
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 435
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 274
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 175
BsrI ACTGG 1 cut(s) 160
BssMI GATC 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 322, 529
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 291
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 322, 529
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 281
CciI TCATGA 1 cut(s) 175
CfoI GCGC 1 cut(s) 354
CseI GACGC 1 cut(s) 116
CviAII CATG 2 cut(s) 176, 334
CviJI RGCY 8 cut(s) 16, 24, 99, 283, 338, 458, 539, 548
CviKI_1 RGCY 8 cut(s) 16, 24, 99, 283, 338, 458, 539, 548
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
EcoT22I ATGCAT 2 cut(s) 87, 94
FaeI CATG 2 cut(s) 179, 337
FatI CATG 2 cut(s) 175, 333
FauNDI CATATG 1 cut(s) 271
FokI GGATG 2 cut(s) 329, 536
FspBI CTAG 3 cut(s) 44, 381, 549
GlaI GCGC 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 1 cut(s) 99
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 354
Hin1II CATG 2 cut(s) 179, 337
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 1 cut(s) 172
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 118, 523
Hpy188III TCNNGA 2 cut(s) 176, 491
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 528
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 71, 85, 92, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 179, 337
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 60, 81, 141
LweI GCATC 3 cut(s) 101, 247, 514
MaeI CTAG 3 cut(s) 44, 381, 549
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 484
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 16, 422
MfeI CAATTG 1 cut(s) 405
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 8, 131, 344, 385, 405, 480, 504
MluNI TGGCCA 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 5 cut(s) 115, 221, 367, 424, 492
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 2 cut(s) 87, 94
MscI TGGCCA 1 cut(s) 99
MseI TTAA 4 cut(s) 18, 204, 389, 513
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 99
MunI CAATTG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 179, 337
NsiI ATGCAT 2 cut(s) 87, 94
PagI TCATGA 1 cut(s) 175
PfeI GAWTC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 4 cut(s) 18, 204, 389, 513
Sau3AI GATC 1 cut(s) 274
SetI ASST 5 cut(s) 49, 79, 168, 232, 550
SfaNI GCATC 3 cut(s) 101, 247, 514
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 7 cut(s) 8, 131, 344, 385, 405, 480, 504
SspI AATATT 2 cut(s) 54, 208
SspMI CTAG 3 cut(s) 44, 381, 549
TaiI ACGT 1 cut(s) 168
TasI AATT 7 cut(s) 8, 131, 344, 385, 405, 480, 504
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 4 cut(s) 18, 204, 389, 513
Tru9I TTAA 4 cut(s) 18, 204, 389, 513
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 5 cut(s) 17, 51, 164, 258, 451
TspRI CASTG 1 cut(s) 160
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 2 cut(s) 8, 504
XspI CTAG 3 cut(s) 44, 381, 549
Zsp2I ATGCAT 2 cut(s) 87, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.