RLG00000034319
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
40581980 .. 40582753
774 bp
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UTR
Exon/CDS
Intron
RLM00000034319

Sequence Viewer

Length: 453 bp
ATGGCCTCTAATGAAATGGAAGTCGATGACAAAGCTGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATAGAGTGCTAGGAGTGAAGCCATATCGTAAGAAAGGCTTGGAACATTATGAAATTTTAGGGGAAATATTTCATACTACTGCTGCAACAGGTCAACTGCATTATGCCTCTAGCCAACTCCCTCCCAACTCAGATGAGGAGCGCGAGTTAGAGAACAAGTTTCTTAATAATGGAGTTCACATCAATCTTGATGATGATTTCAAGATTAACAATGCTCAAACTGAAACAAAAGGAAAAAGAAAGGCTGTGACAGAGGCTCCATCTTCAGAGCAACGTACAAAAAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTGAGGTGATGAAAGAAGAGCTACAACAAAGAAAAGAAAAAAAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

17.4

Weight (kDa)

6.1

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AcsI RAATTY 3 cut(s) 62, 138, 396
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 2 cut(s) 35, 424
AluI AGCT 2 cut(s) 35, 424
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 3 cut(s) 62, 138, 396
Asp700I GAANNNNTTC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 416, 421
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 352
BfaI CTAG 2 cut(s) 95, 195
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 342
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 325, 355
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 414
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 91
BstDEI CTNAG 3 cut(s) 48, 214, 391
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 360
CviAII CATG 1 cut(s) 80
CviJI RGCY 9 cut(s) 5, 35, 106, 123, 198, 329, 341, 386, 424
CviKI_1 RGCY 9 cut(s) 5, 35, 106, 123, 198, 329, 341, 386, 424
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 3 cut(s) 48, 214, 391
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 333
FaeI CATG 1 cut(s) 83
FaiI YATR 6 cut(s) 81, 87, 109, 135, 159, 189
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 95, 195
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HphI GGTGA 2 cut(s) 416, 421
Hpy166II GTNNAC 2 cut(s) 179, 262
Hpy188I TCNGA 2 cut(s) 217, 352
Hpy188III TCNNGA 2 cut(s) 272, 286
Hpy8I GTNNAC 2 cut(s) 179, 262
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 3 cut(s) 79, 170, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 3 cut(s) 48, 214, 391
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 2 cut(s) 223, 346
LpnPI CCDG 1 cut(s) 159
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 2 cut(s) 95, 195
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 331
MboII GAAGA 2 cut(s) 339, 431
MluCI AATT 3 cut(s) 62, 138, 396
MnlI CCTC 6 cut(s) 16, 202, 214, 216, 331, 400
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 249, 291
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 91
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 342
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 2 cut(s) 249, 291
SatI GCNGC 1 cut(s) 168
SetI ASST 5 cut(s) 37, 178, 361, 411, 426
Sse9I AATT 3 cut(s) 62, 138, 396
SspI AATATT 1 cut(s) 153
SspMI CTAG 2 cut(s) 95, 195
TaiI ACGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 62, 138, 396
Tru1I TTAA 2 cut(s) 249, 291
Tru9I TTAA 2 cut(s) 249, 291
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 6 cut(s) 27, 55, 69, 146, 150, 428
XapI RAATTY 3 cut(s) 62, 138, 396
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 95, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.