Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Forward (+)

10035878 .. 10039271

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G061200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCAAACAAGGACCTTGAAAATGAGTTTGATGATAAAGCCTATTGGCCAAAGCCCATTGAAGACCATTTTATTCATCTACTGTATGAAGAGGCAAAAAAAGGCTTGCAAACCAATAATTTAGATAAGACTGAGTGGGCTGGTATAGAAAAGCAGTTGTTTGACAAGTTTGGGAAGAGATACAGTCGTGACAAATTGAGGCAGAAATATAACCGATTGCGCAAGATTCACCGTGAGTTTACGAAGCTCATTTCTCATACCGGGATGGGTTGGGACCCAAACATGAACACCGTTCAAGCATCTGAAGAAGTTTGGGCATCCTATCTCAAGAAAAACAAGTTTGCAAGCCGTTTTCGTAGCAAAGGATGTCCTCACTATGATTTGCTTGGTTTGATTTTCAACTACACCACTGCCTCTGGACAAATGCAATGCGCATCTACTCATTCTCCTCCAGATTCTGATGCTGAAAGAGAGCTAGAAAATGATTTTCTTACCAATGGTGCACATGTAGGTCTTAATCCAGAAAGTGGTTCAAGAGGTTTTAGTGAGGGAGATGAAGGAACTAGCAACAAGAACAAGCGTGCTGCTCTGTTTCCCCAGAGTGATCTTCCATCAAGGTTAAAGTCATCTAAATCAACCAAAATTGATGAAACCATTGAAGCTTGGGCAAAGTCTCTTAATAGCAAGATTGAAGTTTCATTGGCAAAGCTTACGCGTAAGAGTGAAAAGGAAGTGGCCTTTCCATATAAAGAATTGGGCTCCATTGAGGATTGTATGGAAATATTGGAGGCCATGGAGGGAGTGAATGATGATGCTTATGTGAAAGCTTTAGATAAGTTTACTAGTTCGGATTGGAGGAGGATGTTCGTAAAGATGTCGGATTCAAGGAGAAGAGTGTGGCTCAAAAGCCTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

306

Amino Acids

35.16

Weight (kDa)

8.7

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	221, 433
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccII	CGCG	1 cut(s)	715
AcoI	YGGCCR	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	2 cut(s)	505, 713
AgsI	TTSAA	8 cut(s)	20, 62, 296, 400, 534, 659, 692, 885
AhlI	ACTAGT	1 cut(s)	842
AluBI	AGCT	5 cut(s)	247, 475, 662, 709, 827
AluI	AGCT	5 cut(s)	247, 475, 662, 709, 827
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	678
Alw44I	GTGCAC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	3 cut(s)	47, 735, 789
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	584
AspLEI	GCGC	2 cut(s)	222, 434
AspS9I	GGNCC	2 cut(s)	13, 274
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	13, 274
BaeGI	GKGCMC	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BalI	TGGCCA	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	2 cut(s)	259, 619
BceAI	ACGGC	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	678
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	3 cut(s)	476, 564, 843
BisI	GCNGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	586
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	2 cut(s)	13, 274
BmgT120I	GGNCC	2 cut(s)	13, 274
BmiI	GGNNCC	3 cut(s)	275, 276, 760
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	5 cut(s)	308, 326, 443, 451, 802
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	885, 917
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	792
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	4 cut(s)	270, 317, 371, 867
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	438, 871
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	715
BshFI	GGCC	3 cut(s)	49, 737, 791
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	49, 737, 791
Bsp1286I	GDGCHC	2 cut(s)	505, 761
Bsp143I	GATC	1 cut(s)	604
Bsp19I	CCATGG	1 cut(s)	792
BspANI	GGCC	3 cut(s)	49, 737, 791
BspCNI	CTCAG	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	715
BspLI	GGNNCC	3 cut(s)	275, 276, 760
BsrDI	GCAATG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	1 cut(s)	604
BssT1I	CCWWGG	1 cut(s)	792
Bst4CI	ACNGT	4 cut(s)	84, 185, 233, 292
Bst6I	CTCTTC	3 cut(s)	84, 170, 886
BstC8I	GCNNGC	3 cut(s)	107, 346, 582
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	4 cut(s)	270, 317, 371, 867
BstFNI	CGCG	1 cut(s)	715
BstHHI	GCGC	2 cut(s)	222, 434
BstKTI	GATC	1 cut(s)	607
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	1 cut(s)	604
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	1 cut(s)	715
BstV1I	GCAGC	1 cut(s)	571
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	49, 737, 791
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	4 cut(s)	270, 317, 371, 867
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	3 cut(s)	107, 346, 582
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	2 cut(s)	222, 434
Cfr13I	GGNCC	2 cut(s)	13, 274
CviAII	CATG	3 cut(s)	283, 506, 793
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	47
Eam1104I	CTCTTC	3 cut(s)	84, 170, 886
EarI	CTCTTC	3 cut(s)	84, 170, 886
Eco130I	CCWWGG	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	13, 274
Eco57I	CTGAAG	1 cut(s)	324
EcoO109I	RGGNCCY	2 cut(s)	13, 274
EcoT14I	CCWWGG	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	3 cut(s)	286, 509, 796
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	282, 505, 792
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	4 cut(s)	277, 304, 378, 874
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	1 cut(s)	585
FspAI	RTGCGCAY	1 cut(s)	433
FspBI	CTAG	3 cut(s)	476, 564, 843
FspI	TGCGCA	2 cut(s)	221, 433
GlaI	GCGC	2 cut(s)	221, 433
GluI	GCNGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	49, 737, 791
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	2 cut(s)	222, 434
Hin1II	CATG	3 cut(s)	286, 509, 796
Hin6I	GCGC	2 cut(s)	220, 432
HinP1I	GCGC	2 cut(s)	220, 432
HindIII	AAGCTT	3 cut(s)	660, 707, 825
HinfI	GANTC	3 cut(s)	226, 455, 881
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	240, 503, 840
Hpy188I	TCNGA	4 cut(s)	304, 460, 850, 880
Hpy188III	TCNNGA	6 cut(s)	188, 328, 417, 452, 521, 534
Hpy8I	GTNNAC	3 cut(s)	240, 503, 840
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	4 cut(s)	84, 185, 233, 292
HpyCH4V	TGCA	4 cut(s)	109, 344, 427, 503
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	286, 509, 796
HspAI	GCGC	2 cut(s)	220, 432
KflI	GGGWCCC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	604
LmnI	GCTCC	1 cut(s)	764
LpnPI	CCDG	6 cut(s)	126, 274, 402, 465, 534, 611
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	5 cut(s)	308, 326, 443, 451, 802
MaeI	CTAG	3 cut(s)	476, 564, 843
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MboII	GAAGA	6 cut(s)	74, 101, 187, 317, 599, 903
MhlI	GDGCHC	2 cut(s)	505, 761
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	4 cut(s)	118, 194, 642, 752
MluI	ACGCGT	1 cut(s)	713
MluNI	TGGCCA	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	858
Mox20I	TGGCCA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	3 cut(s)	516, 620, 678
Msp20I	TGGCCA	1 cut(s)	49
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	715
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	792
NdeII	GATC	1 cut(s)	604
NlaIII	CATG	3 cut(s)	286, 509, 796
NlaIV	GGNNCC	3 cut(s)	275, 276, 760
NmuCI	GTSAC	1 cut(s)	188
NsbI	TGCGCA	2 cut(s)	221, 433
NspI	RCATGY	1 cut(s)	509
PciI	ACATGT	1 cut(s)	505
PfeI	GAWTC	3 cut(s)	226, 455, 881
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	1 cut(s)	586
PpuMI	RGGWCCY	2 cut(s)	13, 274
PscI	ACATGT	1 cut(s)	505
Psp5II	RGGWCCY	2 cut(s)	13, 274
PspN4I	GGNNCC	3 cut(s)	275, 276, 760
PspPI	GGNCC	2 cut(s)	13, 274
PspPPI	RGGWCCY	2 cut(s)	13, 274
PstNI	CAGNNNCTG	1 cut(s)	458
SaqAI	TTAA	3 cut(s)	516, 620, 678
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	1 cut(s)	604
Sau96I	GGNCC	2 cut(s)	13, 274
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	505, 761
SetI	ASST	9 cut(s)	18, 249, 477, 514, 541, 620, 664, 711, 829
SfaNI	GCATC	5 cut(s)	308, 326, 443, 451, 802
SinI	GGWCC	2 cut(s)	13, 274
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SpeI	ACTAGT	1 cut(s)	842
Sse9I	AATT	4 cut(s)	118, 194, 642, 752
SspI	AATATT	1 cut(s)	783
SspMI	CTAG	3 cut(s)	476, 564, 843
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	4 cut(s)	84, 185, 233, 292
TasI	AATT	4 cut(s)	118, 194, 642, 752
TfiI	GAWTC	3 cut(s)	226, 455, 881
Tru1I	TTAA	3 cut(s)	516, 620, 678
Tru9I	TTAA	3 cut(s)	516, 620, 678
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	6 cut(s)	65, 102, 299, 570, 663, 687
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	527
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	2 cut(s)	13, 274
XceI	RCATGY	1 cut(s)	509
XspI	CTAG	3 cut(s)	476, 564, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.