Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004100.1

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Reverse (-)

23704 .. 24725

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004100.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggcctctaatgaaatggaagttgatgacaaagccgaatggtctgctaagaatgaaggaaaattcattcgtattttgcatgagcatgtgaaaaaaggtgatatgcaaacgtccactttcaaaaagaaaatttgggtggaaataagtgatgagctgtttgctgaaagtacaaaaagatatgttgtgccacaactaaagtctaaattcaatagactacgcaaaaaacaccgtgaattttctgatttgattgagcataccggatttgggtgggatcctattgcgaacactgtaactgcatcagaggaagtatgggctacatatattaagagagtgccaggagtgaagccatatcgtaagaaagggttggaacattatgaaattttaggggaaatatttaacactactactgcaacgggtcaactacattatgcctctagccaactccctcccaattcagatgaagagcgcgagttagagaacaagtttcttaataatggagtaggattcttagctccttatcgaggtgagcggtatcatttgcgtgattacagaggacctcgtcgtacaccgagaggccctagggaattgttcaactacagacattcttcattacgaaatgtaattgagcgatgttttggtgtattgaaagcgagttttccaattttaaaatatatgcctaattatcctccaagaaggcaacgacgtatacctattgcatgttgtgttttacacaattttattcggaaggaagctcgtcgcgacagattgtttgaagcttttgatgtagaagatatgatttttgaggaggaaaacaatacaccaacgaacttagatatgtcacaagagaaccttgcacagatgactaatgttagaaatgcaattgcagaagacttgtggcaagattttatccctcacccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

306

Amino Acids

36.07

Weight (kDa)

8.95

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	2 cut(s)	468, 759
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	2 cut(s)	266, 279
AcsI	RAATTY	5 cut(s)	62, 129, 203, 233, 378
AfaI	GTAC	2 cut(s)	169, 565
AfiI	CCNNNNNNNGG	2 cut(s)	264, 521
AgsI	TTSAA	5 cut(s)	121, 208, 592, 646, 773
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	154, 512, 752, 776
AluI	AGCT	4 cut(s)	154, 512, 752, 776
AlwI	GGATC	2 cut(s)	266, 279
AoxI	GGCC	2 cut(s)	3, 574
ApoI	RAATTY	5 cut(s)	62, 129, 203, 233, 378
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AspA2I	CCTAGG	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	554, 575
AsuHPI	GGTGA	3 cut(s)	110, 536, 905
AvaII	GGWCC	1 cut(s)	554
AvrII	CCTAGG	1 cut(s)	578
BamHI	GGATCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	894
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	336
BfaI	CTAG	2 cut(s)	435, 579
BfmI	CTRYAG	1 cut(s)	595
BlnI	CCTAGG	1 cut(s)	578
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	554, 575
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 521
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	578
BseLI	CCNNNNNNNGG	2 cut(s)	264, 521
BseRI	GAGGAG	1 cut(s)	818
Bsh1236I	CGCG	2 cut(s)	468, 759
BshFI	GGCC	2 cut(s)	5, 576
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	264, 521
BsnI	GGCC	2 cut(s)	5, 576
Bsp143I	GATC	1 cut(s)	271
Bsp68I	TCGCGA	1 cut(s)	759
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	2 cut(s)	5, 576
BspFNI	CGCG	2 cut(s)	468, 759
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	266, 279
BspQI	GCTCTTC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	1 cut(s)	271
BssNAI	GTATAC	1 cut(s)	707
BssT1I	CCWWGG	1 cut(s)	578
Bst1107I	GTATAC	1 cut(s)	707
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	230, 289
Bst6I	CTCTTC	1 cut(s)	456
BstDEI	CTNAG	4 cut(s)	48, 508, 829, 918
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstFNI	CGCG	2 cut(s)	468, 759
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	89, 720
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	595
BstUI	CGCG	2 cut(s)	468, 759
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BstZ17I	GTATAC	1 cut(s)	707
BsuRI	GGCC	2 cut(s)	5, 576
BtgZI	GCGATG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	285
BtuMI	TCGCGA	1 cut(s)	759
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	2 cut(s)	554, 575
Csp6I	GTAC	2 cut(s)	168, 564
CviAII	CATG	3 cut(s)	80, 86, 717
CviQI	GTAC	2 cut(s)	168, 564
DdeI	CTNAG	4 cut(s)	48, 508, 829, 918
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	554
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoO109I	RGGNCCY	2 cut(s)	554, 575
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	3 cut(s)	83, 89, 720
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FatI	CATG	3 cut(s)	79, 85, 716
FblI	GTMKAC	1 cut(s)	706
FspBI	CTAG	2 cut(s)	435, 579
GlaI	GCGC	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	5, 576
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	83, 89, 720
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	1 cut(s)	504
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	3 cut(s)	110, 536, 905
Hpy166II	GTNNAC	4 cut(s)	114, 419, 566, 707
Hpy188I	TCNGA	4 cut(s)	241, 301, 457, 744
Hpy188III	TCNNGA	1 cut(s)	758
Hpy8I	GTNNAC	4 cut(s)	114, 419, 566, 707
Hpy99I	CGWCG	3 cut(s)	564, 705, 759
HpyAV	CCTTC	3 cut(s)	50, 687, 739
HpyCH4III	ACNGT	2 cut(s)	230, 289
HpyCH4IV	ACGT	2 cut(s)	110, 703
HpyCH4V	TGCA	8 cut(s)	79, 106, 296, 410, 716, 854, 878, 884
HpyF3I	CTNAG	4 cut(s)	48, 508, 829, 918
HpySE526I	ACGT	2 cut(s)	110, 703
Hsp92II	CATG	3 cut(s)	83, 89, 720
HspAI	GCGC	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	271
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	3 cut(s)	271, 321, 348
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	435, 579
MaeII	ACGT	2 cut(s)	110, 703
MaeIII	GTNAC	2 cut(s)	289, 837
MalI	GATC	1 cut(s)	273
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	473, 597, 800, 899
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	345
MseI	TTAA	4 cut(s)	324, 396, 489, 665
MslI	CAYNNNNRTG	2 cut(s)	84, 540
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	2 cut(s)	468, 759
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	83, 89, 720
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	837
NruI	TCGCGA	1 cut(s)	759
NspI	RCATGY	2 cut(s)	89, 720
PciSI	GCTCTTC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	558
PpuMI	RGGWCCY	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	554, 575
PspPPI	RGGWCCY	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	558
RruI	TCGCGA	1 cut(s)	759
RsaI	GTAC	2 cut(s)	169, 565
RsaNI	GTAC	2 cut(s)	168, 564
RseI	CAYNNNNRTG	2 cut(s)	84, 540
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	4 cut(s)	324, 396, 489, 665
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	2 cut(s)	554, 575
ScrFI	CCNGG	1 cut(s)	336
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	1 cut(s)	595
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	2 cut(s)	84, 540
SsiI	CCGC	1 cut(s)	529
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	2 cut(s)	435, 579
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	230, 289
TaiI	ACGT	2 cut(s)	113, 706
TaqI	TCGA	1 cut(s)	520
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	4 cut(s)	324, 396, 489, 665
Tru9I	TTAA	4 cut(s)	324, 396, 489, 665
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	837
Tsp45I	GTSAC	1 cut(s)	837
TspDTI	ATGAA	6 cut(s)	27, 55, 69, 390, 474, 597
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	554
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	5 cut(s)	62, 129, 203, 233, 378
XceI	RCATGY	2 cut(s)	89, 720
XmaJI	CCTAGG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	706
XspI	CTAG	2 cut(s)	435, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.