Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Forward (+)

9570168 .. 9572771

Gene Structure 2604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG129400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCCTCTAATGAAGTGGAGATTGATGATAAAGCTGAATGGTCTGCTAAGAATGAAGGAAAATTTATTCGTATTTTGCATGAGCATGTGAAAAAAGGAGATATGCAAACATCCACTTTCAAAAAGAAAATTTGGATGGAAATAAGTGATGAGTTGTTTGCTGAAACTACGAAAAGATACACTGTGGCACAACTCAAGTCTAAGTTCAATAGACTACGCAAAAAACACCGTGAATTTTCTGATTTGATTGAGCATACCGGATTTGGATGGGACCCTATTGCAAACACTGTTACTGCATCAGAGGAAGTATGGGCTACTTATATTAAGAGAGTACCGGGAGTGAAGCCCTATCGTAAGAAAGGCTTGGAACATTATGAAACTTTAGGGGAAATATTCAATACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGCCAGCTCCCTCCCAATTCAGATGATGAGCGCGAGTTAGAGAATAAGTTTCTTAACAATGGAGTTCACATCAATCTTGATGAGGATTTCGATGTTAATAATACTCAAAATGAGATCAGAGGGAAAAGAAAAGCTGTGACAGAGGCTCCACCTTCAGAGCGTCGAACAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

203

Amino Acids

23.56

Weight (kDa)

7.89

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	13 - 107	4.4e-22	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4	PF13837	13 - 81	3.6e-07	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	468
AcsI	RAATTY	3 cut(s)	62, 129, 233
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	121, 208, 397
AluBI	AGCT	3 cut(s)	35, 442, 569
AluI	AGCT	3 cut(s)	35, 442, 569
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	3 cut(s)	62, 129, 233
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	271
BccI	CCATC	2 cut(s)	130, 261
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	435
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	272, 273, 582
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
BseGI	GGATG	3 cut(s)	110, 141, 272
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	258, 335
BslFI	GGGAC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	549
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	3 cut(s)	272, 273, 582
BssMI	GATC	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	184, 230, 289
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	48, 201
BstF5I	GGATG	3 cut(s)	110, 141, 272
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	1 cut(s)	552
BstMBI	GATC	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	334
BstUI	CGCG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	110, 141, 272
BtsIMutI	CAGTG	2 cut(s)	180, 285
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	80, 86
CviJI	RGCY	9 cut(s)	5, 35, 314, 346, 363, 438, 442, 569, 581
CviKI_1	RGCY	9 cut(s)	5, 35, 314, 346, 363, 438, 442, 569, 581
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	48, 201
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	271
FaeI	CATG	2 cut(s)	83, 89
FaiI	YATR	8 cut(s)	81, 87, 104, 255, 310, 321, 375, 429
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	79, 85
FokI	GGATG	3 cut(s)	97, 148, 279
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	467
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	258, 335
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	2 cut(s)	83, 89
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HpaII	CCGG	2 cut(s)	258, 335
Hpy166II	GTNNAC	2 cut(s)	419, 502
Hpy188I	TCNGA	5 cut(s)	241, 301, 457, 554, 592
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	419, 502
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	2 cut(s)	50, 597
HpyCH4III	ACNGT	3 cut(s)	184, 230, 289
HpyCH4V	TGCA	5 cut(s)	79, 106, 281, 296, 410
HpyF3I	CTNAG	2 cut(s)	48, 201
Hsp92II	CATG	2 cut(s)	83, 89
HspAI	GCGC	1 cut(s)	466
KflI	GGGWCCC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	447, 586
LpnPI	CCDG	3 cut(s)	271, 348, 452
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	289, 571
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MluCI	AATT	4 cut(s)	62, 129, 233, 451
MnlI	CCTC	7 cut(s)	16, 295, 442, 456, 511, 548, 571
MseI	TTAA	3 cut(s)	324, 489, 531
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	2 cut(s)	258, 335
MspR9I	CCNGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	468
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	1 cut(s)	549
NlaIII	CATG	2 cut(s)	83, 89
NlaIV	GGNNCC	3 cut(s)	272, 273, 582
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	272, 273, 582
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	324, 489, 531
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	4 cut(s)	37, 444, 571, 589
SfaNI	GCATC	1 cut(s)	305
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	62, 129, 233, 451
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	184, 230, 289
TaqI	TCGA	2 cut(s)	525, 598
TasI	AATT	4 cut(s)	62, 129, 233, 451
Tru1I	TTAA	3 cut(s)	324, 489, 531
Tru9I	TTAA	3 cut(s)	324, 489, 531
TscAI	CASTG	2 cut(s)	187, 292
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	3 cut(s)	27, 69, 390
TspRI	CASTG	2 cut(s)	187, 292
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	3 cut(s)	62, 129, 233
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.