Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001153

Physical Location & Seq

Genomic Coordinates Forward (+)

65678762 .. 65692633

Gene Structure 13872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCAGCACGGGATGAGAATGCAGAGCGGGATGAGAGCGTGGCAATTTTTTACTCAAAAGCTCTATATATTGATCTATTCATTGTGCTCTGACAATCAATCTAAGTTGTGTTCATCTTCCTCAAGAAACAGAGCTTCATCTGGACTCTACTGCTCTAGGTATGCAAGACAGAAGCAAAGGCAGCTTCTCTTGCCCGCATCGGCTGACACTACTGCTCCTGGCGGCCGCCGCTCTGAAAACGTCGACGACCGGTTCCAGATCAAGATAGAGAAGCTGATCTACGACACGGTCGACGAGGACGAGTATGAAGCCATCATCGCCAAGCGAGACGACGACGGCCTAGGGTACCGCGACGACGGTGAGGAAGAGGACTGGACCCGCCGCGGGCTTCCGACGTCGTCGGATGAATCGGACGGCAATATGAGGCCCAGGAGGAGGAAGATGGAGGAGAAGAAGGAGAAGGAGAAGGAGCTGTGGCCCAAAAAACCCAATTCGTCGCTTACGGCGGCGGCAGCGATGATGGGGAAGCAGAGGCTTTCGTCGATGTTCACGTCGTCGGTGTTTAATAAAAGTAGGGATGGTGACAAGGCCAAAGGATTGTCTTGTGATAGCATTGTGGATGATGTGATTGCCGAGTTTGCGCCGGACGAGGCTGATAGAGAGAGATGGAGGAGGAGACTACCGGGAGTGAAGCTCTATCGTAAAAAAGGCTTGGAACATTATGAAACTTTAGGGGAAATATTCAATACTACTATTGCAACGGGTCAACTACATTATGCCTCTAGCCAGCTCCCTCCCAATTCAGATGATGAGCGCGAGTTAGAGAACAAGTTTCTTAACAATGGAGTTCACATCAATCTTGATGAGGATTTCAATGTTAATAATACTCAAAATGAGATCAGAGGGAAAAGAAAAGTTGTGATAGAGACTCTACCTTCAGAGCGTAGAACAAAAAAAAGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGCGAAGTGATGAAAGAAAAACTACAACAAAGAAAAGAAAAAAATGCTGGAGAGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0003896 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006270 GO:0006271 GO:0006272 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0022616 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051716 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097747 GO:0099402 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 DNA_pol_alpha_N zf-DNA_Pol

Protein Analysis

351

Amino Acids

40.43

Weight (kDa)

8.6

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13820 FvH4_4g13820 FvH4_7g00340 FvH4_7g00340
malus_domestica	MD03G1270400.v1.1
prunus_persica	Prupe.2G094900_v2.0.a1 Prupe.2G102600_v2.0.a1 Prupe.6G193000_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.7G061200_v2.0.a1 Prupe.8G054800_v2.0.a1 Prupe.8G117400_v2.0.a1
pyrus_communis	pycom03g21560 pycom07g16360
rosa_chinensis	RchiOBHm_Chr1g0354771
rosa_laevigata	RLG00000001198 RLG00000008665 RLG00000013335 RLG00000015409 RLG00000034319 RLG00000035605
rosa_multiflora	Rmu_sc0001706.1_g000015 Rmu_sc0002322.1_g000017 Rmu_sc0003547.1_g000003 Rmu_sc0004100.1_g000005 Rmu_sc0005327.1_g000016 Rmu_sc0005391.1_g000008 Rmu_sc0005712.1_g000024 Rmu_sc0005828.1_g000009 Rmu_sc0007671.1_g000018
rosa_roxburghii	Rroxscaffold_1G00003860 Rroxscaffold_1G00034960 Rroxscaffold_2G00132460 Rroxscaffold_2G00138020 Rroxscaffold_3G00226530 Rroxscaffold_3G00263690 Rroxscaffold_5G00349740 Rroxscaffold_6G00420740 Rroxscaffold_7G00189380
rosa_rugosa	Rorug01G0229200 Rorug07G0196300
rosa_samantha	Rh2CG067600 Rh4BG064700 Rh4BG219300 Rh4BG219400 Rh4DG015000 Rh4DG015100 Rh5DG120300 Rh5DG242700 Rh5DG449200 Rh7BG129400 Rh7DG459200
rosa_wichuraiana	Rw4G033640 Rw5G021850 Rw6G008400 Rw6G017680 Rw7G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	398
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	345
AccBSI	CCGCTC	2 cut(s)	27, 231
AccI	GTMKAC	2 cut(s)	243, 291
AccII	CGCG	3 cut(s)	351, 384, 816
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	984
AcuI	CTGAAG	1 cut(s)	921
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	384, 435
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	745, 874
AjiI	CACGTC	1 cut(s)	552
AjnI	CCWGG	2 cut(s)	217, 428
AluBI	AGCT	7 cut(s)	61, 134, 184, 274, 472, 694, 790
AluI	AGCT	7 cut(s)	61, 134, 184, 274, 472, 694, 790
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	3 cut(s)	321, 670, 920
AoxI	GGCC	5 cut(s)	223, 337, 425, 476, 588
ApeKI	GCWGC	3 cut(s)	4, 181, 512
ApoI	RAATTY	1 cut(s)	984
AsiGI	ACCGGT	1 cut(s)	249
Asp718I	GGTACC	1 cut(s)	345
AspA2I	CCTAGG	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	643, 816
AspS9I	GGNCC	3 cut(s)	375, 426, 477
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	371, 593
AvaII	GGWCC	1 cut(s)	375
AvrII	CCTAGG	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	345
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	16, 193, 524
BccI	CCATC	5 cut(s)	320, 436, 514, 572, 660
BceAI	ACGGC	3 cut(s)	352, 430, 519
BciT130I	CCWGG	2 cut(s)	219, 430
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	321, 670, 920
BfaI	CTAG	3 cut(s)	156, 341, 783
BisI	GCNGC	9 cut(s)	5, 182, 223, 226, 229, 382, 507, 510, 513
BlnI	CCTAGG	1 cut(s)	340
BlsI	GCNGC	9 cut(s)	6, 183, 224, 227, 230, 383, 508, 511, 514
Bme1390I	CCNGG	3 cut(s)	219, 430, 684
Bme18I	GGWCC	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	552
BmgT120I	GGNCC	3 cut(s)	375, 426, 477
BmiI	GGNNCC	3 cut(s)	254, 347, 377
BmrFI	CCNGG	3 cut(s)	219, 430, 684
BmsI	GCATC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	678, 710
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	340, 382, 428
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 435
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	219, 430
BseDI	CCNNGG	3 cut(s)	340, 382, 428
BseGI	GGATG	5 cut(s)	18, 36, 409, 583, 625
BseLI	CCNNNNNNNGG	2 cut(s)	384, 435
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	4 cut(s)	448, 461, 685, 688
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	16, 193, 524
Bsh1236I	CGCG	3 cut(s)	351, 384, 816
Bsh1285I	CGRYCG	3 cut(s)	226, 250, 291
BshFI	GGCC	5 cut(s)	225, 339, 427, 478, 590
BshNI	GGYRCC	1 cut(s)	345
BshTI	ACCGGT	1 cut(s)	249
BsiEI	CGRYCG	3 cut(s)	226, 250, 291
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	3 cut(s)	250, 644, 683
BslFI	GGGAC	1 cut(s)	974
BslI	CCNNNNNNNGG	2 cut(s)	384, 435
BsmAI	GTCTC	3 cut(s)	321, 670, 920
BsmBI	CGTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	974
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	5 cut(s)	225, 339, 427, 478, 590
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	4 cut(s)	72, 258, 276, 897
BspANI	GGCC	5 cut(s)	225, 339, 427, 478, 590
BspFNI	CGCG	3 cut(s)	351, 384, 816
BspLI	GGNNCC	3 cut(s)	254, 347, 377
BspT107I	GGYRCC	1 cut(s)	345
BsrBI	CCGCTC	2 cut(s)	27, 231
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	3 cut(s)	340, 382, 428
BssMI	GATC	4 cut(s)	72, 258, 276, 897
BssNI	GRCGYC	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	219, 430
Bst4CI	ACNGT	2 cut(s)	289, 359
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	195, 386, 788
BstDEI	CTNAG	2 cut(s)	102, 979
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	5 cut(s)	18, 36, 409, 583, 625
BstFNI	CGCG	3 cut(s)	351, 384, 816
BstHHI	GCGC	2 cut(s)	643, 816
BstKTI	GATC	4 cut(s)	75, 261, 279, 900
BstMAI	GTCTC	3 cut(s)	321, 670, 920
BstMBI	GATC	4 cut(s)	72, 258, 276, 897
BstMCI	CGRYCG	3 cut(s)	226, 250, 291
BstMWI	GCNNNNNNNGC	6 cut(s)	181, 190, 228, 317, 512, 638
BstNI	CCWGG	2 cut(s)	219, 430
BstSCI	CCNGG	3 cut(s)	217, 428, 682
BstUI	CGCG	3 cut(s)	351, 384, 816
BstV1I	GCAGC	3 cut(s)	16, 193, 524
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	5 cut(s)	225, 339, 427, 478, 590
BtgI	CCRYGG	1 cut(s)	382
BtgZI	GCGATG	2 cut(s)	301, 530
BtrI	CACGTC	1 cut(s)	552
BtsCI	GGATG	5 cut(s)	18, 36, 409, 583, 625
Cac8I	GCNNGC	3 cut(s)	195, 386, 788
CciNI	GCGGCCGC	1 cut(s)	223
CfoI	GCGC	2 cut(s)	643, 816
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	3 cut(s)	375, 426, 477
Cfr42I	CCGCGG	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	346
CspAI	ACCGGT	1 cut(s)	249
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	102, 979
DpnI	GATC	4 cut(s)	74, 260, 278, 899
DpnII	GATC	4 cut(s)	72, 258, 276, 897
EaeI	YGGCCR	1 cut(s)	223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	921
EcoRII	CCWGG	2 cut(s)	217, 428
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	321
FaiI	YATR	7 cut(s)	66, 68, 162, 306, 422, 723, 777
FaqI	GGGAC	1 cut(s)	974
FauI	CCCGC	4 cut(s)	20, 202, 377, 386
FblI	GTMKAC	2 cut(s)	243, 291
Fnu4HI	GCNGC	9 cut(s)	5, 182, 223, 226, 229, 382, 507, 510, 513
FokI	GGATG	5 cut(s)	25, 43, 416, 590, 632
Fsp4HI	GCNGC	9 cut(s)	5, 182, 223, 226, 229, 382, 507, 510, 513
FspBI	CTAG	3 cut(s)	156, 341, 783
GlaI	GCGC	2 cut(s)	642, 815
GluI	GCNGC	9 cut(s)	5, 182, 223, 226, 229, 382, 507, 510, 513
HaeIII	GGCC	5 cut(s)	225, 339, 427, 478, 590
HapII	CCGG	3 cut(s)	250, 644, 683
HhaI	GCGC	2 cut(s)	643, 816
Hin1I	GRCGYC	1 cut(s)	395
Hin6I	GCGC	2 cut(s)	641, 814
HinP1I	GCGC	2 cut(s)	641, 814
HincII	GTYRAC	3 cut(s)	244, 292, 767
HindII	GTYRAC	3 cut(s)	244, 292, 767
HinfI	GANTC	3 cut(s)	144, 407, 928
HpaII	CCGG	3 cut(s)	250, 644, 683
HphI	GGTGA	2 cut(s)	371, 593
Hpy166II	GTNNAC	5 cut(s)	244, 292, 549, 767, 850
Hpy188I	TCNGA	8 cut(s)	91, 235, 393, 403, 412, 805, 902, 940
Hpy188III	TCNNGA	5 cut(s)	123, 141, 256, 262, 860
Hpy8I	GTNNAC	5 cut(s)	244, 292, 549, 767, 850
HpyAV	CCTTC	4 cut(s)	448, 454, 460, 945
HpyCH4III	ACNGT	2 cut(s)	289, 359
HpyCH4IV	ACGT	3 cut(s)	240, 395, 551
HpyCH4V	TGCA	4 cut(s)	4, 22, 164, 758
HpyF10VI	GCNNNNNNNGC	6 cut(s)	181, 190, 228, 317, 512, 638
HpyF3I	CTNAG	2 cut(s)	102, 979
HpySE526I	ACGT	3 cut(s)	240, 395, 551
Hsp92I	GRCGYC	1 cut(s)	395
HspAI	GCGC	2 cut(s)	641, 814
KpnI	GGTACC	1 cut(s)	349
KspI	CCGCGG	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	72, 258, 276, 897
LmnI	GCTCC	3 cut(s)	220, 469, 795
Lsp1109I	GCAGC	3 cut(s)	16, 193, 524
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	3 cut(s)	156, 341, 783
MaeII	ACGT	3 cut(s)	240, 395, 551
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	4 cut(s)	74, 260, 278, 899
MbiI	CCGCTC	2 cut(s)	27, 231
MboI	GATC	4 cut(s)	72, 258, 276, 897
MboII	GAAGA	4 cut(s)	108, 377, 451, 463
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	4 cut(s)	44, 490, 799, 984
MlyI	GAGTC	2 cut(s)	138, 922
MmeI	TCCRAC	2 cut(s)	381, 416
MseI	TTAA	3 cut(s)	564, 837, 879
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	3 cut(s)	250, 644, 683
MspR9I	CCNGG	3 cut(s)	219, 430, 684
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	219, 430
MvnI	CGCG	3 cut(s)	351, 384, 816
MwoI	GCNNNNNNNGC	6 cut(s)	181, 190, 228, 317, 512, 638
NciI	CCSGG	1 cut(s)	684
NdeII	GATC	4 cut(s)	72, 258, 276, 897
NlaIV	GGNNCC	3 cut(s)	254, 347, 377
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	581
NotI	GCGGCCGC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 297, 548
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	407
PflFI	GACNNNGTC	2 cut(s)	287, 397
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	9 cut(s)	6, 183, 224, 227, 230, 383, 508, 511, 514
PleI	GAGTC	2 cut(s)	138, 922
PpsI	GAGTC	2 cut(s)	138, 922
Psp6I	CCWGG	2 cut(s)	217, 428
PspGI	CCWGG	2 cut(s)	217, 428
PspN4I	GGNNCC	3 cut(s)	254, 347, 377
PspPI	GGNCC	3 cut(s)	375, 426, 477
PsyI	GACNNNGTC	2 cut(s)	287, 397
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacII	CCGCGG	1 cut(s)	385
SalI	GTCGAC	2 cut(s)	242, 290
SaqAI	TTAA	3 cut(s)	564, 837, 879
SatI	GCNGC	9 cut(s)	5, 182, 223, 226, 229, 382, 507, 510, 513
Sau3AI	GATC	4 cut(s)	72, 258, 276, 897
Sau96I	GGNCC	3 cut(s)	375, 426, 477
SchI	GAGTC	2 cut(s)	138, 922
ScrFI	CCNGG	3 cut(s)	219, 430, 684
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	206
Sfr303I	CCGCGG	1 cut(s)	385
SgrBI	CCGCGG	1 cut(s)	385
SgrDI	CGTCGACG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	4 cut(s)	44, 490, 799, 984
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	3 cut(s)	156, 341, 783
StyD4I	CCNGG	3 cut(s)	217, 428, 682
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	289, 359
TaiI	ACGT	3 cut(s)	243, 398, 554
TaqI	TCGA	3 cut(s)	243, 291, 542
TasI	AATT	4 cut(s)	44, 490, 799, 984
TauI	GCSGC	6 cut(s)	225, 228, 231, 384, 509, 512
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	564, 837, 879
Tru9I	TTAA	3 cut(s)	564, 837, 879
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	3 cut(s)	4, 181, 512
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	7 cut(s)	69, 102, 126, 321, 420, 738, 1016
Tth111I	GACNNNGTC	2 cut(s)	287, 397
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	984
XmaJI	CCTAGG	1 cut(s)	340
XmiI	GTMKAC	2 cut(s)	243, 291
XspI	CTAG	3 cut(s)	156, 341, 783
ZraI	GACGTC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.