RchiOBHm_Chr1g0354771
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001153
Physical Location & Seq
Forward (+)
47596565 .. 47599730
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58029

Sequence Viewer

Length: 867 bp
ATGGCCTCTAATGAAATGGAAGTTGATGACAAAGCCGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATGTGAAAAAAGGTGACATGCAAACGTCCACTTTCAAAAAGAAAATTTGGGTGGAAATAAGTGATGAGCTATTTGCTGAAAGTACAAAAAGATATGTTGTGCCACAACTAAAGTCTAAATTCAATAGACTACGCAAAAAACACCGTGAATTTTCTGATTTGATTGAGCATACCGGATTTGGGTGGGATCCTATTGCGAACACTGTAACTGCATCAGAGGAAGTATGGGCTACATATATTAAGAGAGTGCCAGGAGTGAAGCCATATCGTAAGAAAGGGTTGGAACATTATGAAATTTTAGGGGAAATATTTAACACTACTACTGCAACGGGTCAACTACATTATGCCTCTAGCCAACTCCCTCCCAATTCAGATGAAGAGCGCGAGTTAGAGAACAAGTTTCTTAATAATGGAGTTCATATCAATCTTGATGAGGATTTCAATATTAATAATGCTCAGATTGAGACAAAAGGAAAAAGAAAGGCTATGACAGAGGCTCCAGCTTCAGAGCGTCGTACAAAGAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTGAGGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATACTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGAGACATTGACCATGCCACATTAATCAAAATGATGGATAAGCTTATAATTGTTGAATGGAGGAGGCTCTTTCTTTCCATGTCAGATGAAAGAAGGAGAGCTTGGCTAGCTAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

288

Amino Acids

33.8

Weight (kDa)

6.74

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 13 - 107 1.6e-20 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 13 - 80 6e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AccII CGCG 1 cut(s) 468
AclWI GGATC 2 cut(s) 266, 279
AcsI RAATTY 6 cut(s) 62, 129, 203, 233, 378, 636
AcuI CTGAAG 2 cut(s) 573, 711
AfaI GTAC 3 cut(s) 169, 601, 710
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 5 cut(s) 121, 208, 526, 719, 803
AjnI CCWGG 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 832, 864
AluBI AGCT 6 cut(s) 154, 587, 664, 790, 848, 857
AluI AGCT 6 cut(s) 154, 587, 664, 790, 848, 857
Alw26I GTCTC 2 cut(s) 542, 744
AlwI GGATC 2 cut(s) 266, 279
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 6 cut(s) 62, 129, 203, 233, 378, 636
AseI ATTAAT 2 cut(s) 531, 770
AspLEI GCGC 1 cut(s) 468
AsuHPI GGTGA 3 cut(s) 110, 656, 661
AsuNHI GCTAGC 1 cut(s) 853
BamHI GGATCC 1 cut(s) 271
BccI CCATC 1 cut(s) 775
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 542, 744
BfaI CTAG 3 cut(s) 435, 854, 865
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 273, 582
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 305
BmtI GCTAGC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpmI CTGGAG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 554
BseRI GAGGAG 1 cut(s) 823
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 542, 744
BsmFI GGGAC 1 cut(s) 626
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 271
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 273, 582
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 2 cut(s) 266, 279
BspQI GCTCTTC 1 cut(s) 456
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 230, 289
Bst6I CTCTTC 3 cut(s) 456, 687, 714
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 3 cut(s) 48, 540, 631
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 2 cut(s) 542, 744
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 854
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 2 cut(s) 89, 106
BstSCI CCNGG 1 cut(s) 334
BstUI CGCG 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 855
CfoI GCGC 1 cut(s) 468
CseI GACGC 1 cut(s) 584
Csp6I GTAC 3 cut(s) 168, 600, 709
CviAII CATG 5 cut(s) 80, 86, 103, 761, 826
CviQI GTAC 3 cut(s) 168, 600, 709
DdeI CTNAG 3 cut(s) 48, 540, 631
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 456, 687, 714
EarI CTCTTC 3 cut(s) 456, 687, 714
Eco57I CTGAAG 2 cut(s) 573, 711
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 5 cut(s) 83, 89, 106, 764, 829
FalI AAGNNNNNCTT 2 cut(s) 832, 864
FaqI GGGAC 1 cut(s) 626
FatI CATG 5 cut(s) 79, 85, 102, 760, 825
FspBI CTAG 3 cut(s) 435, 854, 865
GlaI GCGC 1 cut(s) 467
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 584
HhaI GCGC 1 cut(s) 468
Hin1II CATG 5 cut(s) 83, 89, 106, 764, 829
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 788
HpaII CCGG 1 cut(s) 258
HphI GGTGA 3 cut(s) 110, 656, 661
Hpy166II GTNNAC 2 cut(s) 114, 419
Hpy188I TCNGA 6 cut(s) 241, 301, 457, 543, 592, 832
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 2 cut(s) 114, 419
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 2 cut(s) 50, 834
HpyCH4III ACNGT 2 cut(s) 230, 289
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 5 cut(s) 79, 106, 296, 410, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 854
HpyF3I CTNAG 3 cut(s) 48, 540, 631
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 5 cut(s) 83, 89, 106, 764, 829
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 586
LpnPI CCDG 4 cut(s) 271, 321, 348, 597
LweI GCATC 1 cut(s) 305
MaeI CTAG 3 cut(s) 435, 854, 865
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 98, 289
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 3 cut(s) 473, 704, 731
MflI RGATCY 1 cut(s) 271
MluCI AATT 9 cut(s) 62, 129, 203, 233, 378, 451, 636, 732, 795
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 16, 295, 442, 456, 511, 571, 640, 801, 804
MseI TTAA 5 cut(s) 324, 396, 489, 531, 770
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 854
NdeII GATC 1 cut(s) 271
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 5 cut(s) 83, 89, 106, 764, 829
NlaIV GGNNCC 2 cut(s) 273, 582
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 2 cut(s) 89, 106
PciSI GCTCTTC 1 cut(s) 456
PshBI ATTAAT 2 cut(s) 531, 770
PsiI TTATAA 1 cut(s) 794
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 273, 582
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 3 cut(s) 169, 601, 710
RsaNI GTAC 3 cut(s) 168, 600, 709
RseI CAYNNNNRTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 5 cut(s) 324, 396, 489, 531, 770
Sau3AI GATC 1 cut(s) 271
ScaI AGTACT 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 336
SetI ASST 9 cut(s) 100, 113, 156, 589, 651, 666, 792, 850, 859
SfaNI GCATC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 9 cut(s) 62, 129, 203, 233, 378, 451, 636, 732, 795
SspI AATATT 2 cut(s) 393, 529
SspMI CTAG 3 cut(s) 435, 854, 865
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 230, 289
TaiI ACGT 1 cut(s) 113
TasI AATT 9 cut(s) 62, 129, 203, 233, 378, 451, 636, 732, 795
TatI WGTACW 2 cut(s) 167, 708
Tru1I TTAA 5 cut(s) 324, 396, 489, 531, 770
Tru9I TTAA 5 cut(s) 324, 396, 489, 531, 770
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 8 cut(s) 27, 55, 69, 390, 474, 491, 668, 849
TspRI CASTG 1 cut(s) 292
VspI ATTAAT 2 cut(s) 531, 770
XapI RAATTY 6 cut(s) 62, 129, 203, 233, 378, 636
XceI RCATGY 2 cut(s) 89, 106
XspI CTAG 3 cut(s) 435, 854, 865
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.