Rroxscaffold_7G00189380
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
29130584 .. 29134365
3782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189380.1

Sequence Viewer

Length: 348 bp
ATGGAAGTCGATGACAAAGCCGAATGGTCTGCTAAGAATGAAGGAAAATTCATTCGTATTTTGCATGAGCATAGGCTCCATCTTCGAGCGACCTACAAAAAATGGGACAAAATGGAAGCCTACTTAGAAATTTGTGGTAAGGTGATGAAAGAAAAGCTACAACAAAGAAAAGAAAAAAATGCTGAAGAGAATAAGGAGAAGTACTCCATTGAAGAGTGTGTGCAAATTGTGGAAACATTGGGAGATATTGACCATGCCACATTTATTAAAATGATGGATAAGCTTATAATTCTTGAATGGAGAAGGCTTTTTCTTTCAATGTCGATGAAAGAAGGAGAGCTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.8

Weight (kDa)

6.44

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AcsI RAATTY 2 cut(s) 47, 129
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 3 cut(s) 212, 296, 318
AjuI GAANNNNNNNTTGG 1 cut(s) 324
AluBI AGCT 3 cut(s) 157, 283, 340
AluI AGCT 3 cut(s) 157, 283, 340
ApoI RAATTY 2 cut(s) 47, 129
AsuHPI GGTGA 1 cut(s) 154
BccI CCATC 2 cut(s) 87, 268
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BfaI CTAG 1 cut(s) 346
BmcAI AGTACT 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BslFI GGGAC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 180, 207
BstDEI CTNAG 2 cut(s) 33, 124
Csp6I GTAC 1 cut(s) 202
CviAII CATG 2 cut(s) 65, 254
CviJI RGCY 8 cut(s) 20, 76, 119, 157, 283, 307, 340, 345
CviKI_1 RGCY 8 cut(s) 20, 76, 119, 157, 283, 307, 340, 345
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 33, 124
Eam1104I CTCTTC 2 cut(s) 180, 207
EarI CTCTTC 2 cut(s) 180, 207
Eco57I CTGAAG 1 cut(s) 204
FaeI CATG 2 cut(s) 68, 257
FaiI YATR 4 cut(s) 66, 72, 255, 287
FalI AAGNNNNNCTT 1 cut(s) 324
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 64, 253
FspBI CTAG 1 cut(s) 346
Hin1II CATG 2 cut(s) 68, 257
HindIII AAGCTT 1 cut(s) 281
HphI GGTGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 35, 297, 326
HpyCH4V TGCA 2 cut(s) 64, 223
HpyF3I CTNAG 2 cut(s) 33, 124
Hsp92II CATG 2 cut(s) 68, 257
LmnI GCTCC 1 cut(s) 81
MaeI CTAG 1 cut(s) 346
MboII GAAGA 3 cut(s) 74, 197, 224
MluCI AATT 4 cut(s) 47, 129, 225, 288
MseI TTAA 1 cut(s) 267
NlaIII CATG 2 cut(s) 68, 257
NlaIV GGNNCC 1 cut(s) 77
PsiI TTATAA 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 267
ScaI AGTACT 1 cut(s) 203
SetI ASST 5 cut(s) 95, 144, 159, 285, 342
SgeI CNNG 4 cut(s) 77, 98, 266, 305
Sse9I AATT 4 cut(s) 47, 129, 225, 288
SspMI CTAG 1 cut(s) 346
TaqI TCGA 3 cut(s) 9, 85, 323
TasI AATT 4 cut(s) 47, 129, 225, 288
TatI WGTACW 1 cut(s) 201
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TspDTI ATGAA 4 cut(s) 40, 54, 161, 341
XapI RAATTY 2 cut(s) 47, 129
XspI CTAG 1 cut(s) 346
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.