FvH4_6g49050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001467
Physical Location & Seq
Reverse (-)
36838038 .. 36838450
413 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49050.t1

Sequence Viewer

Length: 336 bp
ATGAACACCGACACGTCGTTTGTAGTCTCATCTTGGAACAAAGACACAGCTGATAATATCCCCATCGGAGAAGAACAGAGATGGCTTCTTTGGTCGGAATCTGCTGCTTCACTCCCCCAACGGGTTATTTACCGCGCCCTTAACTTCCCTCCAAAACCAAACAACACTCAATGGAAGCTAAGGCCACCCAGAATCAGTCGCTTCTTCTTCTACGATGTCGTTTCGGAGCTCGAAGAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAAGTCATGACGGCCGCCGTGGAGAAAGGCTGGAACACATTCGTGTTTCAAAGTCAGAAACTTGCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.77

Weight (kDa)

5.37

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 133, 280, 330
AcoI YGGCCR 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 121
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 315
AjiI CACGTC 1 cut(s) 15
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 3 cut(s) 50, 178, 229
AluI AGCT 3 cut(s) 50, 178, 229
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 31
AoxI GGCC 2 cut(s) 182, 277
ApeKI GCWGC 1 cut(s) 104
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 71, 75
BceAI ACGGC 2 cut(s) 267, 292
BcoDI GTCTC 1 cut(s) 31
BisI GCNGC 2 cut(s) 105, 280
BlsI GCNGC 2 cut(s) 106, 281
BmgBI CACGTC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 121
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 184, 279
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 2 cut(s) 184, 279
Bsp1286I GDGCHC 1 cut(s) 231
BspACI CCGC 3 cut(s) 133, 280, 330
BspANI GGCC 2 cut(s) 184, 279
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 31
BstMCI CGRYCG 1 cut(s) 280
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 184, 279
BtgI CCRYGG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 264
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 137
CviAII CATG 1 cut(s) 272
CviJI RGCY 7 cut(s) 50, 85, 178, 184, 229, 279, 295
CviKI_1 RGCY 7 cut(s) 50, 85, 178, 184, 229, 279, 295
DdeI CTNAG 1 cut(s) 179
EaeI YGGCCR 1 cut(s) 277
EagI CGGCCG 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 1 cut(s) 275
FaiI YATR 1 cut(s) 273
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 105, 280
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 105, 280
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 105, 280
HaeIII GGCC 2 cut(s) 184, 279
HhaI GCGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 98, 192
Hpy188I TCNGA 4 cut(s) 68, 97, 226, 322
Hpy188III TCNNGA 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 2 cut(s) 202, 281
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 14
MboII GAAGA 5 cut(s) 83, 196, 199, 245, 248
MhlI GDGCHC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 50
MvnI CGCG 1 cut(s) 135
NlaIII CATG 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 306
PagI TCATGA 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 98, 192
PkrI GCNGC 2 cut(s) 106, 281
Psp124BI GAGCTC 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 105, 280
SduI GDGCHC 1 cut(s) 231
SetI ASST 4 cut(s) 17, 52, 180, 231
SmiMI CAYNNNNRTG 1 cut(s) 306
SsiI CCGC 3 cut(s) 133, 280, 330
SstI GAGCTC 1 cut(s) 231
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 231
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 2 cut(s) 98, 192
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.