Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001467

Physical Location & Seq

Genomic Coordinates Reverse (-)

54527261 .. 54529553

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG401400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATCCTGATCCACTGGGCATTCGCCGATGAAACCCGCACGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTACCCAACCCGGCCACTCTTCGCAATCGGCGGCTTTTGAAACTTGGTCAAAGTGATGGACATGGTGAGGTTCCAGCTATAGAGTACTCGCATATCCCTTCGTTCTCGGACGACGTCATTTCGGGCACTAAGCATGATGATGCAGTAAAATTATTGATTTCTTCACATAATAAACACCCAATGGAAACCAAGGCCACCCAGAGTTCATCAATTGCTTCTTCTACGACGTCGTTTGGGAGCTCGAAGAAGATGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACCTTCCTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTCTGATGGATATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHQS

Protein Analysis

158

Amino Acids

17.54

Weight (kDa)

8.0

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49050
malus_domestica	MD00G1026200.v1.1 MD00G1027200.v1.1 MD00G1027300.v1.1 MD02G1040400.v1.1 MD02G1040800.v1.1 MD02G1041100.v1.1 MD02G1041500.v1.1 MD02G1041600.v1.1 MD11G1046200.v1.1 MD15G1234700.v1.1
pyrus_communis	pycom02g03190 pycom02g03430 pycom02g03440 pycom09g10760 pycom09g12970
rosa_chinensis	RchiOBHm_Chr1g0367931
rosa_laevigata	RLG00000009858 RLG00000017790 RLG00000029248 RLG00000036011
rosa_multiflora	Rmu_sc0000243.1_g000024 Rmu_sc0007790.1_g000006 Rmu_sc0012870.1_g000004
rosa_roxburghii	Rroxscaffold_1G00037580 Rroxscaffold_1G00038180 Rroxscaffold_1G00049490 Rroxscaffold_2G00089170 Rroxscaffold_2G00095040 Rroxscaffold_2G00127190 Rroxscaffold_3G00227090 Rroxscaffold_4G00301620
rosa_rugosa	Rorug02G0254800 Rorug03G0325900 Rorug05G0157000 Rorug05G0237600
rosa_samantha	Rh1BG165600 Rh1BG241700 Rh1DG196200 Rh1DG270500 Rh2BG468700 Rh2CG265400 Rh2CG401400 Rh3CG316000 Rh3DG350500 Rh4BG102900 Rh4DG196700 Rh5CG562400 Rh5DG264100 Rh7DG148300 Rh7DG240400
rosa_wichuraiana	Rw5G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	222, 335
Acc36I	ACCTGC	1 cut(s)	373
AciI	CCGC	3 cut(s)	37, 136, 396
AclWI	GGATC	2 cut(s)	4, 87
AcoI	YGGCCR	2 cut(s)	117, 393
AcyI	GRCGYC	2 cut(s)	219, 332
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	43, 76, 453
AgsI	TTSAA	1 cut(s)	145
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	67, 182, 345
AluI	AGCT	3 cut(s)	67, 182, 345
Alw21I	GWGCWC	2 cut(s)	69, 347
AlwI	GGATC	2 cut(s)	4, 87
AoxI	GGCC	3 cut(s)	117, 297, 393
Asp700I	GAANNNNTTC	1 cut(s)	419
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	58, 182
BaeGI	GKGCMC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	69, 347
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	69, 347
BccI	CCATC	3 cut(s)	155, 349, 458
BceAI	ACGGC	2 cut(s)	383, 408
BcnI	CCSGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	137, 396
BlsI	GCNGC	2 cut(s)	138, 397
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	97, 177
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	219, 332
BsaJI	CCNNGG	2 cut(s)	294, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 76, 453
Bse1I	ACTGG	2 cut(s)	20, 458
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	294, 399
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	43, 76, 453
BseNI	ACTGG	2 cut(s)	20, 458
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	233
BseX3I	CGGCCG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	119, 299, 395
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	69, 347
BsiSI	CCGG	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	43, 76, 453
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	119, 299, 395
Bsp1286I	GDGCHC	3 cut(s)	69, 233, 347
Bsp143I	GATC	3 cut(s)	3, 9, 79
BspACI	CCGC	3 cut(s)	37, 136, 396
BspANI	GGCC	3 cut(s)	119, 299, 395
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	97, 177
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	4, 87
BsrI	ACTGG	2 cut(s)	20, 458
BssECI	CCNNGG	2 cut(s)	294, 399
BssMI	GATC	3 cut(s)	3, 9, 79
BssNI	GRCGYC	2 cut(s)	219, 332
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	2 cut(s)	219, 332
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	399
BstKTI	GATC	3 cut(s)	6, 12, 82
BstMBI	GATC	3 cut(s)	3, 9, 79
BstMCI	CGRYCG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	119, 299, 395
BtgI	CCRYGG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	380
CciI	TCATGA	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	76, 167, 239, 388
CviJI	RGCY	9 cut(s)	67, 98, 119, 139, 182, 299, 345, 395, 411
CviKI_1	RGCY	9 cut(s)	67, 98, 119, 139, 182, 299, 345, 395, 411
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	5, 11, 81
DpnII	GATC	3 cut(s)	3, 9, 79
EaeI	YGGCCR	2 cut(s)	117, 393
EagI	CGGCCG	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	2 cut(s)	67, 345
EclXI	CGGCCG	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	69, 347
Eco52I	CGGCCG	1 cut(s)	393
Eco53kI	GAGCTC	2 cut(s)	67, 345
EcoICRI	GAGCTC	2 cut(s)	67, 345
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	2 cut(s)	69, 347
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	79, 170, 242, 391
FaiI	YATR	8 cut(s)	77, 168, 185, 198, 240, 273, 389, 471
FatI	CATG	4 cut(s)	75, 166, 238, 387
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	137, 396
FriOI	GRGCYC	2 cut(s)	69, 347
Fsp4HI	GCNGC	2 cut(s)	137, 396
FspBI	CTAG	1 cut(s)	475
GluI	GCNGC	2 cut(s)	137, 396
HaeIII	GGCC	3 cut(s)	119, 299, 395
HapII	CCGG	1 cut(s)	116
Hin1I	GRCGYC	2 cut(s)	219, 332
Hin1II	CATG	4 cut(s)	79, 170, 242, 391
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	2 cut(s)	58, 182
Hpy188I	TCNGA	6 cut(s)	64, 95, 214, 432, 438, 463
Hpy188III	TCNNGA	2 cut(s)	7, 388
Hpy99I	CGWCG	4 cut(s)	95, 221, 334, 337
HpyAV	CCTTC	2 cut(s)	213, 430
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	219, 332
HpyCH4V	TGCA	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	2 cut(s)	219, 332
Hsp92I	GRCGYC	2 cut(s)	219, 332
Hsp92II	CATG	4 cut(s)	79, 170, 242, 391
Kzo9I	GATC	3 cut(s)	3, 9, 79
LmnI	GCTCC	4 cut(s)	64, 72, 95, 342
LpnPI	CCDG	8 cut(s)	20, 129, 192, 317, 368, 397, 437, 439
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	475
MaeII	ACGT	2 cut(s)	219, 332
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	5, 11, 81
MboI	GATC	3 cut(s)	3, 9, 79
MboII	GAAGA	6 cut(s)	116, 258, 315, 361, 364, 450
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	3 cut(s)	69, 233, 347
MluCI	AATT	2 cut(s)	254, 315
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	80, 166, 401
MroXI	GAANNNNTTC	1 cut(s)	419
MslI	CAYNNNNRTG	2 cut(s)	44, 243
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	3, 9, 79
NlaIII	CATG	4 cut(s)	79, 170, 242, 391
NlaIV	GGNNCC	2 cut(s)	97, 177
OliI	CACNNNNGTG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	387
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	138, 397
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
Psp124BI	GAGCTC	2 cut(s)	69, 347
PspN4I	GGNNCC	2 cut(s)	97, 177
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	44, 243
SacI	GAGCTC	2 cut(s)	69, 347
SatI	GCNGC	2 cut(s)	137, 396
Sau3AI	GATC	3 cut(s)	3, 9, 79
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	3 cut(s)	69, 233, 347
SetI	ASST	8 cut(s)	69, 177, 184, 222, 335, 347, 387, 422
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	44, 243
Sse9I	AATT	2 cut(s)	254, 315
SsiI	CCGC	3 cut(s)	37, 136, 396
SspMI	CTAG	1 cut(s)	475
SstI	GAGCTC	2 cut(s)	69, 347
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	2 cut(s)	222, 335
TaqI	TCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	254, 315
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	2 cut(s)	139, 398
TscAI	CASTG	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	45, 71, 300
TspGWI	ACGGA	2 cut(s)	79, 386
TspRI	CASTG	1 cut(s)	20
Tth111I	GACNNNGTC	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	475
ZraI	GACGTC	2 cut(s)	220, 333
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.