Rh1DG196200

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001467
Physical Location & Seq
Reverse (-)
38738350 .. 38748031
9682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG196200.1

Sequence Viewer

Length: 471 bp
ATGGAAACCAAGGCCACCCAGTGTTCATCAGTTGATTCTTCTATGACGTCGTTTGGGAGCTCGAAGAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAAAGAGGCTGGAACACCTTCCTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTTCTCACATCGATCTTTTGATCGTCTCCCTTCAACTCACTTTCTTCGTCTTCCTCTTGATAGAAGGGCATTCTTGCAGCCTCGCAAACGCATATATGAGAATTACTCGTTGCCTGAGGATTTGACAGCTCAAGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCTGCAGGGGAGTGGGCTTGTTGTGGCATCTCTTACAGAGTGGCATCTTCCAGAGAAATACTGGACGAGGAAGAGCAAACCAAGGAATGGTCTCTGATAATGATTCTGGAAATGAGTCCGATGAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

156

Amino Acids

17.97

Weight (kDa)

6.74

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 21
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 168, 426
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 4 cut(s) 60, 302, 320, 341
AluI AGCT 4 cut(s) 60, 302, 320, 341
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 203, 435
AoxI GGCC 2 cut(s) 12, 108
ApeKI GCWGC 3 cut(s) 250, 320, 341
Asp700I GAANNNNTTC 1 cut(s) 134
AxyI CCTNAGG 1 cut(s) 288
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 2 cut(s) 74, 215
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 262, 307, 328
BceAI ACGGC 2 cut(s) 98, 123
BcoDI GTCTC 2 cut(s) 203, 435
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 4 cut(s) 111, 251, 321, 342
BlsI GCNGC 4 cut(s) 112, 252, 322, 343
BmrI ACTGGG 1 cut(s) 13
BmsI GCATC 2 cut(s) 375, 392
BmuI ACTGGG 1 cut(s) 13
BpiI GAAGAC 2 cut(s) 74, 215
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpuEI CTTGAG 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 9, 114, 326, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 426
Bse1I ACTGG 3 cut(s) 19, 173, 405
Bse21I CCTNAGG 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 4 cut(s) 9, 114, 326, 420
BseLI CCNNNNNNNGG 2 cut(s) 168, 426
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 3 cut(s) 19, 173, 405
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 262, 307, 328
BsgI GTGCAG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 14, 110
BshVI ATCGAT 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 168, 426
BsmAI GTCTC 2 cut(s) 203, 435
BsmBI CGTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 2 cut(s) 14, 110
Bso31I GGTCTC 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 185, 193
BspACI CCGC 1 cut(s) 111
BspANI GGCC 2 cut(s) 14, 110
BspCNI CTCAG 1 cut(s) 280
BspDI ATCGAT 1 cut(s) 184
BspHI TCATGA 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 435
BsrI ACTGG 3 cut(s) 19, 173, 405
BssECI CCNNGG 4 cut(s) 9, 114, 326, 420
BssMI GATC 2 cut(s) 185, 193
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 3 cut(s) 9, 326, 420
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 2 cut(s) 188, 196
BstMAI GTCTC 2 cut(s) 203, 435
BstMBI GATC 2 cut(s) 185, 193
BstMCI CGRYCG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 262, 307, 328
BstV2I GAAGAC 2 cut(s) 74, 215
BstZI CGGCCG 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 2 cut(s) 14, 110
BsuTUI ATCGAT 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 26
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 184
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 103
CviJI RGCY 9 cut(s) 14, 60, 110, 126, 253, 302, 320, 341, 356
CviKI_1 RGCY 9 cut(s) 14, 60, 110, 126, 253, 302, 320, 341, 356
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 187, 195
DpnII GATC 2 cut(s) 185, 193
DraIII CACNNNGTG 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 3 cut(s) 9, 326, 420
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 435
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 60
EcoT14I CCWWGG 3 cut(s) 9, 326, 420
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 3 cut(s) 9, 326, 420
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 1 cut(s) 106
FaiI YATR 5 cut(s) 44, 104, 266, 268, 270
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 111, 251, 321, 342
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 4 cut(s) 111, 251, 321, 342
GluI GCNGC 4 cut(s) 111, 251, 321, 342
HaeIII GGCC 2 cut(s) 14, 110
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 106
HinfI GANTC 4 cut(s) 35, 148, 442, 454
Hpy188I TCNGA 4 cut(s) 147, 153, 435, 459
Hpy188III TCNNGA 5 cut(s) 103, 230, 305, 390, 446
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 5 cut(s) 145, 213, 231, 302, 328
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 250, 323, 344
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 2 cut(s) 185, 193
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 2 cut(s) 57, 338
Lsp1109I GCAGC 3 cut(s) 262, 307, 328
LweI GCATC 2 cut(s) 375, 392
MaeII ACGT 1 cut(s) 47
MalI GATC 2 cut(s) 187, 195
MboI GATC 2 cut(s) 185, 193
MboII GAAGA 8 cut(s) 30, 76, 79, 209, 215, 343, 378, 422
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 274
MlyI GAGTC 2 cut(s) 157, 463
MnlI CCTC 5 cut(s) 116, 237, 264, 283, 400
MroXI GAANNNNTTC 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 242
NdeII GATC 2 cut(s) 185, 193
NlaIII CATG 1 cut(s) 106
PagI TCATGA 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 405
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 35, 442
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 4 cut(s) 112, 252, 322, 343
PleI GAGTC 2 cut(s) 156, 462
PpsI GAGTC 2 cut(s) 156, 462
Psp124BI GAGCTC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SacI GAGCTC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 405
SatI GCNGC 4 cut(s) 111, 251, 321, 342
Sau3AI GATC 2 cut(s) 185, 193
SchI GAGTC 2 cut(s) 157, 463
SduI GDGCHC 1 cut(s) 62
SetI ASST 9 cut(s) 50, 62, 102, 137, 304, 313, 322, 343, 470
SfaNI GCATC 2 cut(s) 375, 392
SfcI CTRYAG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 1 cut(s) 274
SsiI CCGC 1 cut(s) 111
SstI GAGCTC 1 cut(s) 62
StyI CCWWGG 3 cut(s) 9, 326, 420
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 62, 184
TasI AATT 1 cut(s) 274
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 35, 442
TscAI CASTG 1 cut(s) 26
TseI GCWGC 3 cut(s) 250, 320, 341
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 134
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.