MD00G1026200.v1.1

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001467
Physical Location & Seq
Reverse (-)
4472998 .. 4477225
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1026200.v1.1.491

Sequence Viewer

Length: 558 bp
ATGAACCTTAAATCCATCTCCGCCAGGTCCATGCCCGACCCGCATACGCTCCTAAGGTCCTCTCACCTCCTCCAGGTAAATCACACCTCTCTGTGTTTCTCGTTAATTTTTTCTTTGGTTGCTGAGAAAATAGATAAAGAGAAAGAAAAATGTGGTCTTTCCTTTGTGTTTTGTTATCAAATGGCTTGGGTAAGGGACGTTGCTAAAAGCAGTATGGAGGATTTTTCGAGGAATTTGAGTCCTGTGGAGTACTCTCATACCCCGGCAATCCCTGACGACGTCGTTCCTGGAACTAAGGTCTGTTTGGAAGGTAAAGTTACTGTACGTAACGGAATAGTTTGTTTGAGTCCTAAAGTTGTGACTGTGTTGGGAGGTGTTGTTCAATCACTTAACGAAGAATGGCAGATGAATACAAAATATTCCGAGTTTTCACATTCATCTTTAAGGATTTCACAGGAAAGTGATGGTAACGGCCCCTCTCCATTTGAGAAGTTGCAAGTTGGGGCAGCTAAAAGTCGGTTTCCTGAGCAGGACAAGTTTTCACATCAGTATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

186

Amino Acids

20.64

Weight (kDa)

7.0

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 60 - 135 9.1e-13 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AciI CCGC 2 cut(s) 21, 41
AcsI RAATTY 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 251, 324
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 3 cut(s) 23, 72, 286
AloI GAACNNNNNNTCC 3 cut(s) 28, 363, 395
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 232
AspS9I GGNCC 3 cut(s) 27, 57, 473
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 2 cut(s) 27, 57
AxyI CCTNAGG 1 cut(s) 53
BbvI GCAGC 1 cut(s) 518
BccI CCATC 2 cut(s) 23, 458
BceAI ACGGC 1 cut(s) 487
BciT130I CCWGG 3 cut(s) 25, 74, 288
BcnI CCSGG 1 cut(s) 263
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 4 cut(s) 25, 74, 263, 288
Bme18I GGWCC 2 cut(s) 27, 57
BmgT120I GGNCC 3 cut(s) 27, 57, 473
BmiI GGNNCC 1 cut(s) 475
BmrFI CCNGG 4 cut(s) 25, 74, 263, 288
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse21I CCTNAGG 1 cut(s) 53
BseBI CCWGG 3 cut(s) 25, 74, 288
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 114, 516
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 518
BshFI GGCC 1 cut(s) 474
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 474
BspACI CCGC 2 cut(s) 21, 41
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 2 cut(s) 115, 517
BspLI GGNNCC 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 261
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 3 cut(s) 25, 74, 288
Bst4CI ACNGT 2 cut(s) 322, 364
BstACI GRCGYC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 326
BstDEI CTNAG 4 cut(s) 53, 123, 294, 525
BstENI CCTNNNNNAGG 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 3 cut(s) 25, 74, 288
BstSCI CCNGG 4 cut(s) 23, 72, 261, 286
BstSNI TACGTA 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 518
Bsu36I CCTNAGG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 474
Cfr13I GGNCC 3 cut(s) 27, 57, 473
Csp6I GTAC 2 cut(s) 250, 323
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 185, 474, 509
CviKI_1 RGCY 3 cut(s) 185, 474, 509
CviQI GTAC 2 cut(s) 250, 323
DdeI CTNAG 4 cut(s) 53, 123, 294, 525
EciI GGCGGA 1 cut(s) 10
Eco105I TACGTA 1 cut(s) 326
Eco47I GGWCC 2 cut(s) 27, 57
Eco81I CCTNAGG 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 57
EcoRII CCWGG 3 cut(s) 23, 72, 286
FaeI CATG 1 cut(s) 34
FaiI YATR 4 cut(s) 32, 45, 215, 258
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 507
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 1 cut(s) 34
HinfI GANTC 2 cut(s) 238, 346
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 524, 555
Hpy99I CGWCG 2 cut(s) 281, 284
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 322, 364
HpyCH4IV ACGT 3 cut(s) 198, 279, 325
HpyCH4V TGCA 1 cut(s) 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 4 cut(s) 53, 123, 294, 525
HpySE526I ACGT 3 cut(s) 198, 279, 325
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 34
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 1 cut(s) 518
MaeII ACGT 3 cut(s) 198, 279, 325
MaeIII GTNAC 4 cut(s) 316, 326, 358, 467
MboII GAAGA 1 cut(s) 407
MluCI AATT 2 cut(s) 105, 232
MlyI GAGTC 2 cut(s) 247, 355
MnlI CCTC 8 cut(s) 70, 77, 80, 97, 211, 222, 365, 487
MseI TTAA 4 cut(s) 9, 104, 390, 443
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 4 cut(s) 25, 74, 263, 288
MvaI CCWGG 3 cut(s) 25, 74, 288
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 263
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 358
PflFI GACNNNGTC 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 2 cut(s) 246, 354
PpsI GAGTC 2 cut(s) 246, 354
Ppu21I YACGTR 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 23, 72, 286
PspGI CCWGG 3 cut(s) 23, 72, 286
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 3 cut(s) 27, 57, 473
PspPPI RGGWCCY 1 cut(s) 57
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 2 cut(s) 251, 324
RsaNI GTAC 2 cut(s) 250, 323
SaqAI TTAA 4 cut(s) 9, 104, 390, 443
SatI GCNGC 1 cut(s) 507
Sau96I GGNCC 3 cut(s) 27, 57, 473
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 2 cut(s) 247, 355
ScrFI CCNGG 4 cut(s) 25, 74, 263, 288
SinI GGWCC 2 cut(s) 27, 57
SnaBI TACGTA 1 cut(s) 326
Sse9I AATT 2 cut(s) 105, 232
SsiI CCGC 2 cut(s) 21, 41
SspI AATATT 1 cut(s) 419
StyD4I CCNGG 4 cut(s) 23, 72, 261, 286
TaaI ACNGT 2 cut(s) 322, 364
TaiI ACGT 3 cut(s) 201, 282, 328
TaqI TCGA 1 cut(s) 227
TasI AATT 2 cut(s) 105, 232
TatI WGTACW 1 cut(s) 249
Tru1I TTAA 4 cut(s) 9, 104, 390, 443
Tru9I TTAA 4 cut(s) 9, 104, 390, 443
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 17, 422, 426
TspGWI ACGGA 1 cut(s) 345
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 27, 57
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 232
ZraI GACGTC 1 cut(s) 280
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.