Rmu_sc0007790.1_g000006

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007790.1
OG0001467
Physical Location & Seq
Forward (+)
19200 .. 19689
490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007790.1_g000006.1.cds

Sequence Viewer

Length: 339 bp
atggaaaccaaggccacccagagttcatcagttgcttcttctacgacgtcgtttgggagctcgaagaagacggtgtgggtttggacggagagcaagcaggtcatgacggccgccgtggagagaggctggaacaccttcctgtttcagcgtcagaaactcgccgatgactggtcttatcctcttttgatcaaagacggagggattttcgatagtgagaacacgagagttgccacagttgttgacgtttccaatcccaaagagttggaagagcttcaacccgaaaacggggtggccgagaatgttgttgttgatttgctggattggcaggggaggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

112

Amino Acids

12.55

Weight (kDa)

4.64

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 1 cut(s) 111
AcoI YGGCCR 2 cut(s) 108, 291
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 3 cut(s) 168, 284, 285
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 2 cut(s) 60, 271
AluI AGCT 2 cut(s) 60, 271
Alw21I GWGCWC 1 cut(s) 62
AoxI GGCC 3 cut(s) 12, 108, 291
Asp700I GAANNNNTTC 2 cut(s) 134, 270
BanII GRGCYC 1 cut(s) 62
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 98, 123
BclI TGATCA 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 9, 114
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 284, 285
Bse1I ACTGG 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 9, 114
BseLI CCNNNNNNNGG 3 cut(s) 168, 284, 285
BseNI ACTGG 1 cut(s) 173
BseX3I CGGCCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 14, 110, 293
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 168, 284, 285
BsnI GGCC 3 cut(s) 14, 110, 293
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 1 cut(s) 111
BspANI GGCC 3 cut(s) 14, 110, 293
BspHI TCATGA 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 9, 114
BssMI GATC 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 47
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 73, 235
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 108
BsuRI GGCC 3 cut(s) 14, 110, 293
BtgI CCRYGG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 102
CseI GACGC 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 1 cut(s) 103
CviJI RGCY 6 cut(s) 14, 60, 110, 126, 271, 293
CviKI_1 RGCY 6 cut(s) 14, 60, 110, 126, 271, 293
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 2 cut(s) 108, 291
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 62
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 106
FaiI YATR 1 cut(s) 104
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 3 cut(s) 14, 110, 293
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 106
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 2 cut(s) 49, 52
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 73, 235
HpyCH4IV ACGT 2 cut(s) 47, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpySE526I ACGT 2 cut(s) 47, 243
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 1 cut(s) 186
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 7 cut(s) 32, 83, 112, 152, 154, 302, 311
MaeII ACGT 2 cut(s) 47, 243
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 4 cut(s) 30, 76, 79, 278
MhlI GDGCHC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 4 cut(s) 116, 189, 191, 324
MroXI GAANNNNTTC 2 cut(s) 134, 270
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 1 cut(s) 186
NlaIII CATG 1 cut(s) 106
NmeAIII GCCGAG 1 cut(s) 319
PagI TCATGA 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdmI GAANNNNTTC 2 cut(s) 134, 270
PkrI GCNGC 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 62
SacI GAGCTC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 261
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 62
SetI ASST 7 cut(s) 50, 62, 102, 137, 246, 273, 335
SsiI CCGC 1 cut(s) 111
SstI GAGCTC 1 cut(s) 62
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 73, 235
TaiI ACGT 2 cut(s) 50, 246
TaqI TCGA 2 cut(s) 62, 207
TauI GCSGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 2 cut(s) 101, 210
XmnI GAANNNNTTC 2 cut(s) 134, 270
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.