Rw5G007280

Protein of unknown function (DUF632)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
7650840 .. 7660151
9312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007280.1

Sequence Viewer

Length: 270 bp
ATGGCACATGTCACCGCCCACATTTGCCAGGCAGGTGAGGTCATGAAATTTGAGTACCAAAAGAAGGTCACCTCGCTGAGCAAGCTGAAGAAATGTAGTACTAACTCAGAAGCATTGGAGAAATCAAGAGCAGCAGTAAATGAATGTGAGATACCCTTGTTGCATGACTTCAATGGTAGTGCAAAAGAGAATGGGGCGTCCATTGAGGTGAAAACAGAAGAACAAATGGGATATAAGTATGGCGAAACTTGCTTTCGTTTATGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.97

Weight (kDa)

6.81

Isoelectric Point (pI)

21.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 23
AciI CCGC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 2 cut(s) 56, 100
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 47
AsuHPI GGTGA 4 cut(s) 4, 47, 61, 220
BaeI ACNNNNGTAYC 2 cut(s) 143, 176
BbvI GCAGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 29
BfaI CTAG 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 1 cut(s) 132
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 68, 120
BseXI GCAGC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp1720I GCTNAGC 1 cut(s) 77
BspACI CCGC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 69, 119
BspHI TCATGA 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 77, 106
BstEII GGTNACC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 82, 249
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 11
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 143
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 83
CciI TCATGA 1 cut(s) 42
CseI GACGC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 55, 99
CviAII CATG 3 cut(s) 8, 43, 164
CviJI RGCY 1 cut(s) 85
CviKI_1 RGCY 1 cut(s) 85
CviQI GTAC 2 cut(s) 55, 99
DdeI CTNAG 2 cut(s) 77, 106
Eco57I CTGAAG 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 3 cut(s) 11, 46, 167
FaiI YATR 6 cut(s) 9, 44, 165, 234, 240, 262
FatI CATG 3 cut(s) 7, 42, 163
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 268
GluI GCNGC 1 cut(s) 132
HgaI GACGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 3 cut(s) 11, 46, 167
HphI GGTGA 4 cut(s) 4, 47, 61, 220
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 43, 126
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 163, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 249
HpyF3I CTNAG 2 cut(s) 77, 106
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 3 cut(s) 11, 46, 167
LpnPI CCDG 3 cut(s) 14, 18, 41
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 10, 67
MboII GAAGA 2 cut(s) 100, 230
MluCI AATT 1 cut(s) 47
MnlI CCTC 3 cut(s) 31, 82, 199
MslI CAYNNNNRTG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 82, 249
NlaIII CATG 3 cut(s) 11, 46, 167
NmuCI GTSAC 2 cut(s) 10, 67
NspI RCATGY 1 cut(s) 11
PagI TCATGA 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 23
PciI ACATGT 1 cut(s) 7
PkrI GCNGC 1 cut(s) 133
PscI ACATGT 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 27
RsaI GTAC 2 cut(s) 56, 100
RsaNI GTAC 2 cut(s) 55, 99
RseI CAYNNNNRTG 1 cut(s) 206
SatI GCNGC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 29
SetI ASST 6 cut(s) 37, 42, 69, 74, 87, 210
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 1 cut(s) 47
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 27
TasI AATT 1 cut(s) 47
TatI WGTACW 1 cut(s) 98
TseFI GTSAC 2 cut(s) 10, 67
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 2 cut(s) 10, 67
TspDTI ATGAA 2 cut(s) 59, 156
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 11
XspI CTAG 1 cut(s) 268
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.