Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001467

Physical Location & Seq

Genomic Coordinates Forward (+)

3304183 .. 3307968

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1040800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGGTGTTGATTTTGGCCATTTGCCCTCATTCTCACAAAAGGGGAACCAATCCCCCTACGATGCCGTTTGTTGACATACTTGGGACCGTACCGTACATTTGCCTTTTTTGTTGCAAAATTCAGAAAAACCCGGCGAACAGGCGCCAAAAATATAGAGGGGAGTTCCGACGCCGCAATCGAACCCTAAGAAGCAAATGGTGGTGCTTCGGGGACCTTGAACAAGTGAAGGCGATGATCCTGACCCACTCCGCCTTGCCCGACGACACGCGTACGGTGGTGAATACAGTGCAAGCCGAGCTCACTAACATGGACCTCAAATCCATCTCCGCCAGGTCCTTGCCCGACCCGCATGCGATCTCAAAGTCCTCTCACATCCTCGGCCCCAAAGTCCTCCAGGTGTCAATTCCACGTACCCCGCATGAGTGTTTGCATGTTGTTGCAATCGGTGTAGTCGGTGCTCACTGCTGCTGGCCACGTTTGTTTGCTGGTTGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RMI1_N

Protein Analysis

167

Amino Acids

18.72

Weight (kDa)

9.79

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49050
malus_domestica	MD00G1026200.v1.1 MD00G1027200.v1.1 MD00G1027300.v1.1 MD02G1040400.v1.1 MD02G1040800.v1.1 MD02G1041100.v1.1 MD02G1041500.v1.1 MD02G1041600.v1.1 MD11G1046200.v1.1 MD15G1234700.v1.1
pyrus_communis	pycom02g03190 pycom02g03430 pycom02g03440 pycom09g10760 pycom09g12970
rosa_chinensis	RchiOBHm_Chr1g0367931
rosa_laevigata	RLG00000009858 RLG00000017790 RLG00000029248 RLG00000036011
rosa_multiflora	Rmu_sc0000243.1_g000024 Rmu_sc0007790.1_g000006 Rmu_sc0012870.1_g000004
rosa_roxburghii	Rroxscaffold_1G00037580 Rroxscaffold_1G00038180 Rroxscaffold_1G00049490 Rroxscaffold_2G00089170 Rroxscaffold_2G00095040 Rroxscaffold_2G00127190 Rroxscaffold_3G00227090 Rroxscaffold_4G00301620
rosa_rugosa	Rorug02G0254800 Rorug03G0325900 Rorug05G0157000 Rorug05G0237600
rosa_samantha	Rh1BG165600 Rh1BG241700 Rh1DG196200 Rh1DG270500 Rh2BG468700 Rh2CG265400 Rh2CG401400 Rh3CG316000 Rh3DG350500 Rh4BG102900 Rh4DG196700 Rh5CG562400 Rh5DG264100 Rh7DG148300 Rh7DG240400
rosa_wichuraiana	Rw5G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccII	CGCG	1 cut(s)	271
AciI	CCGC	5 cut(s)	175, 252, 330, 350, 419
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	2 cut(s)	18, 473
AcsI	RAATTY	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	145, 172
AfaI	GTAC	4 cut(s)	93, 98, 274, 415
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	332, 396
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	2 cut(s)	303, 463
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	18, 382, 473
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	5 cut(s)	87, 214, 313, 336, 383
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	4 cut(s)	87, 214, 313, 336
BalI	TGGCCA	2 cut(s)	20, 475
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	303, 463
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	2 cut(s)	334, 398
BcnI	CCSGG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	2 cut(s)	175, 469
BlsI	GCNGC	2 cut(s)	176, 470
Bme1390I	CCNGG	3 cut(s)	134, 334, 398
Bme18I	GGWCC	4 cut(s)	87, 214, 313, 336
BmgT120I	GGNCC	5 cut(s)	87, 214, 313, 336, 383
BmiI	GGNNCC	5 cut(s)	49, 88, 146, 215, 385
BmrFI	CCNGG	3 cut(s)	134, 334, 398
BmsI	GCATC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	413
BsaHI	GRCGYC	2 cut(s)	145, 172
BsaJI	CCNNGG	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	334, 398
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	20, 384, 475
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	2 cut(s)	303, 463
BsiSI	CCGG	1 cut(s)	134
BsiWI	CGTACG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	100, 227
BsmFI	GGGAC	2 cut(s)	100, 227
BsnI	GGCC	3 cut(s)	20, 384, 475
Bsp1286I	GDGCHC	2 cut(s)	303, 463
Bsp143I	GATC	2 cut(s)	237, 357
BspACI	CCGC	5 cut(s)	175, 252, 330, 350, 419
BspANI	GGCC	3 cut(s)	20, 384, 475
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	5 cut(s)	49, 88, 146, 215, 385
BspPI	GGATC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	2 cut(s)	237, 357
BssNI	GRCGYC	2 cut(s)	145, 172
Bst2UI	CCWGG	2 cut(s)	334, 398
Bst4CI	ACNGT	4 cut(s)	91, 96, 277, 289
BstACI	GRCGYC	2 cut(s)	145, 172
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	294, 354, 473
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	240, 360
BstMBI	GATC	2 cut(s)	237, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 349
BstNI	CCWGG	2 cut(s)	334, 398
BstNSI	RCATGY	2 cut(s)	356, 437
BstSCI	CCNGG	3 cut(s)	132, 332, 396
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	20, 384, 475
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	294, 463
Cac8I	GCNNGC	3 cut(s)	294, 354, 473
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	5 cut(s)	87, 214, 313, 336, 383
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	4 cut(s)	92, 97, 273, 414
CviAII	CATG	4 cut(s)	310, 353, 422, 434
CviJI	RGCY	5 cut(s)	20, 296, 301, 384, 475
CviKI_1	RGCY	5 cut(s)	20, 296, 301, 384, 475
CviQI	GTAC	4 cut(s)	92, 97, 273, 414
DdeI	CTNAG	1 cut(s)	188
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	2 cut(s)	239, 359
DpnII	GATC	2 cut(s)	237, 357
EaeI	YGGCCR	2 cut(s)	18, 473
EciI	GGCGGA	2 cut(s)	241, 319
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	4 cut(s)	87, 214, 313, 336
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	2 cut(s)	214, 336
EcoRII	CCWGG	2 cut(s)	332, 396
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
FaeI	CATG	4 cut(s)	313, 356, 425, 437
FaiI	YATR	6 cut(s)	80, 156, 311, 354, 423, 435
FaqI	GGGAC	2 cut(s)	100, 227
FatI	CATG	4 cut(s)	309, 352, 421, 433
FauI	CCCGC	2 cut(s)	357, 426
Fnu4HI	GCNGC	2 cut(s)	175, 469
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	175, 469
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	175, 469
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	20, 384, 475
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	2 cut(s)	145, 172
Hin1II	CATG	4 cut(s)	313, 356, 425, 437
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	126, 170
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	174, 266
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	4 cut(s)	91, 96, 277, 289
HpyCH4IV	ACGT	2 cut(s)	412, 478
HpyCH4V	TGCA	4 cut(s)	117, 292, 433, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 349
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	2 cut(s)	412, 478
Hsp92I	GRCGYC	2 cut(s)	145, 172
Hsp92II	CATG	4 cut(s)	313, 356, 425, 437
HspAI	GCGC	1 cut(s)	145
KasI	GGCGCC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	237, 357
LpnPI	CCDG	9 cut(s)	127, 147, 254, 319, 346, 383, 410, 457, 474
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	54
MaeII	ACGT	2 cut(s)	412, 478
MalI	GATC	2 cut(s)	239, 359
MboI	GATC	2 cut(s)	237, 357
MhlI	GDGCHC	2 cut(s)	303, 463
MlsI	TGGCCA	2 cut(s)	20, 475
MluCI	AATT	2 cut(s)	120, 405
MluI	ACGCGT	1 cut(s)	269
MluNI	TGGCCA	2 cut(s)	20, 475
Mly113I	GGCGCC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	6 cut(s)	39, 152, 326, 379, 389, 404
Mox20I	TGGCCA	2 cut(s)	20, 475
MscI	TGGCCA	2 cut(s)	20, 475
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	2 cut(s)	20, 475
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	3 cut(s)	134, 334, 398
MvaI	CCWGG	2 cut(s)	334, 398
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	298, 349
NarI	GGCGCC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	237, 357
NlaIII	CATG	4 cut(s)	313, 356, 425, 437
NlaIV	GGNNCC	5 cut(s)	49, 88, 146, 215, 385
NmeAIII	GCCGAG	2 cut(s)	322, 360
NspI	RCATGY	2 cut(s)	356, 437
PaeI	GCATGC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
Pfl23II	CGTACG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	176, 470
PluTI	GGCGCC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	413
PpuMI	RGGWCCY	2 cut(s)	214, 336
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	2 cut(s)	214, 336
Psp6I	CCWGG	2 cut(s)	332, 396
PspGI	CCWGG	2 cut(s)	332, 396
PspLI	CGTACG	1 cut(s)	272
PspN4I	GGNNCC	5 cut(s)	49, 88, 146, 215, 385
PspPI	GGNCC	5 cut(s)	87, 214, 313, 336, 383
PspPPI	RGGWCCY	2 cut(s)	214, 336
RsaI	GTAC	4 cut(s)	93, 98, 274, 415
RsaNI	GTAC	4 cut(s)	92, 97, 273, 414
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	303
SatI	GCNGC	2 cut(s)	175, 469
Sau3AI	GATC	2 cut(s)	237, 357
Sau96I	GGNCC	5 cut(s)	87, 214, 313, 336, 383
ScrFI	CCNGG	3 cut(s)	134, 334, 398
SduI	GDGCHC	2 cut(s)	303, 463
SetI	ASST	7 cut(s)	219, 303, 318, 338, 402, 415, 481
SfaNI	GCATC	1 cut(s)	54
SfoI	GGCGCC	1 cut(s)	146
SinI	GGWCC	4 cut(s)	87, 214, 313, 336
SmiMI	CAYNNNNRTG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	2 cut(s)	120, 405
SsiI	CCGC	5 cut(s)	175, 252, 330, 350, 419
SspDI	GGCGCC	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	132, 332, 396
TaaI	ACNGT	4 cut(s)	91, 96, 277, 289
TaiI	ACGT	2 cut(s)	415, 481
TaqI	TCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	120, 405
TauI	GCSGC	1 cut(s)	177
TscAI	CASTG	2 cut(s)	294, 470
TseI	GCWGC	1 cut(s)	468
TspRI	CASTG	2 cut(s)	294, 470
VpaK11BI	GGWCC	4 cut(s)	87, 214, 313, 336
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	2 cut(s)	356, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.