Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001467

Physical Location & Seq

Genomic Coordinates Forward (+)

3384172 .. 3385686

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1041500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGATTGTACCGTACGTTTGCCCTTTTACCGCCAAGTCCTTGTCCGACCCGCATTACGCTCCGAAAGTCATCTCACCTCCTCGGCCCCAAATTCCTGCAGATAGCGTGGGTAATAGACGTTACTAAATTCCGTGTGGAGGATTTTACGAGGAATTCGAGGAGTCGGCGGCTTTTGGAACTTGGGCTCAGAGACGGCCAAGGTGAGGTAGCAGCTGAGGAGTATTCTCATATCCCGGCAACCCCAGACGACGTCGTTCCTGGAACTAAGGATGAACAGATTCGTGCTCTAGATCAGGGCAAAAGCTTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000217 GO:0000228 GO:0000278 GO:0000280 GO:0000400 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008047 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0030234 GO:0031422 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0043596 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050790 GO:0050896 GO:0051098 GO:0051099 GO:0051101 GO:0051276 GO:0051716 GO:0065007 GO:0065009 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098772 GO:0098813 GO:0140014 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

RMI1_N

Protein Analysis

105

Amino Acids

11.79

Weight (kDa)

9.35

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49050
malus_domestica	MD00G1026200.v1.1 MD00G1027200.v1.1 MD00G1027300.v1.1 MD02G1040400.v1.1 MD02G1040800.v1.1 MD02G1041100.v1.1 MD02G1041500.v1.1 MD02G1041600.v1.1 MD11G1046200.v1.1 MD15G1234700.v1.1
pyrus_communis	pycom02g03190 pycom02g03430 pycom02g03440 pycom09g10760 pycom09g12970
rosa_chinensis	RchiOBHm_Chr1g0367931
rosa_laevigata	RLG00000009858 RLG00000017790 RLG00000029248 RLG00000036011
rosa_multiflora	Rmu_sc0000243.1_g000024 Rmu_sc0007790.1_g000006 Rmu_sc0012870.1_g000004
rosa_roxburghii	Rroxscaffold_1G00037580 Rroxscaffold_1G00038180 Rroxscaffold_1G00049490 Rroxscaffold_2G00089170 Rroxscaffold_2G00095040 Rroxscaffold_2G00127190 Rroxscaffold_3G00227090 Rroxscaffold_4G00301620
rosa_rugosa	Rorug02G0254800 Rorug03G0325900 Rorug05G0157000 Rorug05G0237600
rosa_samantha	Rh1BG165600 Rh1BG241700 Rh1DG196200 Rh1DG270500 Rh2BG468700 Rh2CG265400 Rh2CG401400 Rh3CG316000 Rh3DG350500 Rh4BG102900 Rh4DG196700 Rh5CG562400 Rh5DG264100 Rh7DG148300 Rh7DG240400
rosa_wichuraiana	Rw5G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AciI	CCGC	3 cut(s)	32, 52, 169
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	3 cut(s)	92, 128, 154
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	11, 16
AfiI	CCNNNNNNNGG	2 cut(s)	139, 205
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	215, 306
AluI	AGCT	2 cut(s)	215, 306
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	85, 196
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	3 cut(s)	92, 128, 154
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	68, 215
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	211, 295
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	2 cut(s)	170, 213
BlsI	GCNGC	2 cut(s)	171, 214
Bme1390I	CCNGG	2 cut(s)	236, 261
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	236, 261
Bpu10I	CCTNAGC	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	82, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 205
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	82, 199
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	139, 205
BseMII	CTCAG	2 cut(s)	202, 207
BseRI	GAGGAG	3 cut(s)	71, 175, 233
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	87, 198
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	236
BsiWI	CGTACG	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	139, 205
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	87, 198
Bsp1286I	GDGCHC	2 cut(s)	189, 289
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	3 cut(s)	32, 52, 169
BspANI	GGCC	2 cut(s)	87, 198
BspCNI	CTCAG	2 cut(s)	201, 208
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	82, 199
BssMI	GATC	1 cut(s)	292
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	188, 216, 267
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	2 cut(s)	234, 259
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	87, 198
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	10, 15
CviJI	RGCY	6 cut(s)	87, 172, 187, 198, 215, 306
CviKI_1	RGCY	6 cut(s)	87, 172, 187, 198, 215, 306
CviQI	GTAC	2 cut(s)	10, 15
DdeI	CTNAG	3 cut(s)	188, 216, 267
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	199
Esp3I	CGTCTC	1 cut(s)	186
FaiI	YATR	1 cut(s)	231
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	170, 213
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	170, 213
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	2 cut(s)	170, 213
HaeIII	GGCC	2 cut(s)	87, 198
HapII	CCGG	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	2 cut(s)	163, 280
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	68, 215
Hpy188I	TCNGA	3 cut(s)	48, 65, 191
Hpy188III	TCNNGA	1 cut(s)	290
Hpy99I	CGWCG	2 cut(s)	254, 257
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	3 cut(s)	17, 120, 252
HpyCH4V	TGCA	1 cut(s)	100
HpyF3I	CTNAG	3 cut(s)	188, 216, 267
HpySE526I	ACGT	3 cut(s)	17, 120, 252
Hsp92I	GRCGYC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	110, 246, 249, 258, 273, 281
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	3 cut(s)	17, 120, 252
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	189, 289
MluCI	AATT	3 cut(s)	92, 128, 154
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	7 cut(s)	89, 92, 133, 144, 153, 199, 211
MroXI	GAANNNNTTC	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	236, 261
MvaI	CCWGG	1 cut(s)	261
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	280
Pfl23II	CGTACG	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	171, 214
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspLI	CGTACG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	11, 16
RsaNI	GTAC	2 cut(s)	10, 15
SatI	GCNGC	2 cut(s)	170, 213
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	236, 261
SduI	GDGCHC	2 cut(s)	189, 289
SetI	ASST	8 cut(s)	20, 81, 123, 205, 210, 217, 255, 308
SfcI	CTRYAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	92, 128, 154
SsiI	CCGC	3 cut(s)	32, 52, 169
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	234, 259
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	3 cut(s)	20, 123, 255
TaqI	TCGA	1 cut(s)	158
TasI	AATT	3 cut(s)	92, 128, 154
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	251
XapI	RAATTY	3 cut(s)	92, 128, 154
XbaI	TCTAGA	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.