MD02G1041600.v1.1

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001467
Physical Location & Seq
Forward (+)
3393136 .. 3394317
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1041600.v1.1.491

Sequence Viewer

Length: 447 bp
ATGATCCTGATCCACTCCGCCTTGTCCGGCGACACGCGTACGGTGGTGGAATTCAGTGGAAGCCGAGCTCACCAACATGGACCTCAAATCCATCTCCGCCAGCTCCTTGCTCGACCCGCGTACGCTCCGAATGTCCTCTCACCTCCTCAGCCCCAAAGTCCTCCAGTGTGTAGGATTTTGCGAGGAATTCGACTTTTGAAACTTGGGCTCACAGACGGCCGCAGTGAGGTAGTTGCTGTGAAGGACTCTCATATCCCGGCAATCCCTGGCGACTTCTTTCCTAGAACTAAGGTTCGTCTGGAAGGTAAAGCTACTGTACTGAACGGAATGGTATGTTTGAGTCCTAAAATCGTGACAGTGTTAGGAGGTGTTGTTCAACCACTTTACGAAGATTGGCAGATGAATAAAAAATATTCCGGGTTTTCACCTTCATCTTTAAGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

149

Amino Acids

16.2

Weight (kDa)

10.17

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 64 - 134 1.9e-11 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 37, 119
AciI CCGC 4 cut(s) 18, 97, 117, 220
AclWI GGATC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 50, 186
AfaI GTAC 3 cut(s) 40, 122, 318
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 35
AgsI TTSAA 2 cut(s) 199, 377
AjnI CCWGG 1 cut(s) 265
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 3 cut(s) 68, 103, 311
AluI AGCT 3 cut(s) 68, 103, 311
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 4
AoxI GGCC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 50, 186
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 2 cut(s) 257, 418
AsuHPI GGTGA 3 cut(s) 62, 132, 417
AvaII GGWCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 70, 210
Bbv12I GWGCWC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 2 cut(s) 257, 418
BfaI CTAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 3 cut(s) 257, 267, 418
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 3 cut(s) 257, 267, 418
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 147
BpuMI CCSGG 2 cut(s) 257, 418
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 135
BseX3I CGGCCG 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 37, 119
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 3 cut(s) 27, 257, 417
BsiWI CGTACG 2 cut(s) 38, 120
BslI CCNNNNNNNGG 1 cut(s) 226
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 70, 210
Bsp143I GATC 2 cut(s) 3, 9
BspACI CCGC 4 cut(s) 18, 97, 117, 220
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 2 cut(s) 37, 119
BspPI GGATC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 3, 9
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 43, 316, 358
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 147, 288
BstFNI CGCG 2 cut(s) 37, 119
BstKTI GATC 2 cut(s) 6, 12
BstMBI GATC 2 cut(s) 3, 9
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 3 cut(s) 255, 265, 416
BstUI CGCG 2 cut(s) 37, 119
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 4 cut(s) 61, 171, 229, 363
Cac8I GCNNGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 39, 121, 317
CviAII CATG 1 cut(s) 77
CviJI RGCY 8 cut(s) 63, 68, 103, 151, 208, 219, 311, 442
CviKI_1 RGCY 8 cut(s) 63, 68, 103, 151, 208, 219, 311, 442
CviQI GTAC 3 cut(s) 39, 121, 317
DdeI CTNAG 2 cut(s) 147, 288
DpnI GATC 2 cut(s) 5, 11
DpnII GATC 2 cut(s) 3, 9
EaeI YGGCCR 1 cut(s) 217
EagI CGGCCG 1 cut(s) 217
EciI GGCGGA 2 cut(s) 7, 86
Ecl136II GAGCTC 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 70, 210
Eco47I GGWCC 1 cut(s) 80
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRI GAATTC 2 cut(s) 50, 186
EcoRII CCWGG 1 cut(s) 265
EcoT38I GRGCYC 2 cut(s) 70, 210
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 78, 252, 334
FatI CATG 1 cut(s) 76
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 220
FriOI GRGCYC 2 cut(s) 70, 210
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 219
HapII CCGG 3 cut(s) 27, 257, 417
Hin1II CATG 1 cut(s) 80
HinfI GANTC 2 cut(s) 245, 340
HpaII CCGG 3 cut(s) 27, 257, 417
HphI GGTGA 3 cut(s) 62, 132, 417
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 7, 299, 352
HpyAV CCTTC 3 cut(s) 235, 296, 438
HpyCH4III ACNGT 3 cut(s) 43, 316, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 147, 288
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 2 cut(s) 3, 9
LmnI GCTCC 2 cut(s) 108, 130
LpnPI CCDG 9 cut(s) 20, 40, 113, 177, 252, 270, 279, 284, 430
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 5, 11
MboI GATC 2 cut(s) 3, 9
MboII GAAGA 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 70, 210
MluCI AATT 2 cut(s) 50, 186
MluI ACGCGT 1 cut(s) 35
MlyI GAGTC 2 cut(s) 239, 349
MnlI CCTC 8 cut(s) 93, 146, 153, 156, 171, 176, 220, 359
MseI TTAA 2 cut(s) 437, 445
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 3 cut(s) 27, 257, 417
MspR9I CCNGG 3 cut(s) 257, 267, 418
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 2 cut(s) 37, 119
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 2 cut(s) 257, 418
NdeII GATC 2 cut(s) 3, 9
NlaIII CATG 1 cut(s) 80
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 352
Pfl23II CGTACG 2 cut(s) 38, 120
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 2 cut(s) 239, 348
PpsI GAGTC 2 cut(s) 239, 348
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspLI CGTACG 2 cut(s) 38, 120
PspPI GGNCC 1 cut(s) 80
RsaI GTAC 3 cut(s) 40, 122, 318
RsaNI GTAC 3 cut(s) 39, 121, 317
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 437, 445
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 2 cut(s) 3, 9
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 2 cut(s) 239, 349
ScrFI CCNGG 3 cut(s) 257, 267, 418
SduI GDGCHC 2 cut(s) 70, 210
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 2 cut(s) 50, 186
SsiI CCGC 4 cut(s) 18, 97, 117, 220
SspI AATATT 1 cut(s) 413
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 3 cut(s) 255, 265, 416
TaaI ACNGT 3 cut(s) 43, 316, 358
TaqI TCGA 2 cut(s) 112, 190
TasI AATT 2 cut(s) 50, 186
TatI WGTACW 1 cut(s) 316
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 437, 445
Tru9I TTAA 2 cut(s) 437, 445
TscAI CASTG 4 cut(s) 61, 171, 229, 363
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 416, 420
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 4 cut(s) 61, 171, 229, 363
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 2 cut(s) 50, 186
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.