Rroxscaffold_1G00049490

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001467
Physical Location & Seq
Forward (+)
69715661 .. 69720620
4960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049490.1

Sequence Viewer

Length: 465 bp
ATGATCCTGATCCACTGGGCATTCGCCGATGAAACCCACACGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCATCGGAGCCAAGTCGTTACCCAACCCGGCCACTCTTCGCAAGTCATCTCATCTTCTCAGTCCCAAAGTCCTTCAGTTGGGGCTTTTGAAACTTGGTCAAAGTGATGGACATGGTAAGGTTCCAGCTATAGAGTACTCGCATATCCCTTCGTTCTCGGACGACGTCATTTCGGGCACTAAGAAATCAAATTTTGGGTCATCAGATTCCCTTGATAGCTTATTTGGCGACAAAGATGCAAGCAGTGCTCTGCAGGTACCGCCGCCATTTTCTGCCTTTATTCATCTATGTAAACACTGCATGCATCATACAGATGATGGTTCTGGTGCTTGTTTTGAATCAGAACGGACTGAGCTGGGAAAAGACTCTCCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

154

Amino Acids

16.6

Weight (kDa)

6.28

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 331
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 43
AciI CCGC 2 cut(s) 347, 350
AclWI GGATC 2 cut(s) 4, 87
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 2 cut(s) 224, 345
AfiI CCNNNNNNNGG 3 cut(s) 43, 76, 166
AgsI TTSAA 2 cut(s) 178, 425
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 4 cut(s) 67, 215, 306, 442
AluI AGCT 4 cut(s) 67, 215, 306, 442
Alw21I GWGCWC 2 cut(s) 69, 337
AlwI GGATC 2 cut(s) 4, 87
AoxI GGCC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 277
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp718I GGTACC 1 cut(s) 343
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 69, 337
BccI CCATC 3 cut(s) 98, 188, 398
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcnI CCSGG 1 cut(s) 116
BfmI CTRYAG 2 cut(s) 216, 338
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 97, 210, 345
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 2 cut(s) 313, 400
BmuI ACTGGG 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 76, 166
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 43, 76, 166
BseMII CTCAG 2 cut(s) 160, 429
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 69, 337
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 3 cut(s) 43, 76, 166
BsmFI GGGAC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 3 cut(s) 69, 266, 337
Bsp143I GATC 3 cut(s) 3, 9, 79
BspACI CCGC 2 cut(s) 347, 350
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 2 cut(s) 159, 430
BspLI GGNNCC 3 cut(s) 97, 210, 345
BspMAI CTGCAG 1 cut(s) 342
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 2 cut(s) 4, 87
BspT107I GGYRCC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 20
BssMI GATC 3 cut(s) 3, 9, 79
BssNI GRCGYC 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 328, 389
BstDEI CTNAG 4 cut(s) 146, 267, 438, 462
BstKTI GATC 3 cut(s) 6, 12, 82
BstMBI GATC 3 cut(s) 3, 9, 79
BstMWI GCNNNNNNNGC 3 cut(s) 312, 332, 346
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 2 cut(s) 216, 338
BstSLI GKGCMC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 119
BtsI GCAGTG 2 cut(s) 337, 382
BtsIMutI CAGTG 3 cut(s) 13, 337, 382
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 328, 389
Csp6I GTAC 2 cut(s) 223, 344
CviAII CATG 3 cut(s) 76, 200, 388
CviJI RGCY 7 cut(s) 67, 98, 119, 172, 215, 306, 442
CviKI_1 RGCY 7 cut(s) 67, 98, 119, 172, 215, 306, 442
CviQI GTAC 2 cut(s) 223, 344
DdeI CTNAG 4 cut(s) 146, 267, 438, 462
DpnI GATC 3 cut(s) 5, 11, 81
DpnII GATC 3 cut(s) 3, 9, 79
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 3 cut(s) 79, 203, 391
FaiI YATR 7 cut(s) 77, 201, 218, 231, 376, 389, 396
FaqI GGGAC 1 cut(s) 135
FatI CATG 3 cut(s) 75, 199, 387
Fnu4HI GCNGC 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 350
GsaI CCCAGC 1 cut(s) 446
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 3 cut(s) 79, 203, 391
HinfI GANTC 3 cut(s) 293, 425, 452
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 5 cut(s) 64, 95, 247, 292, 430
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 170, 246
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 4 cut(s) 326, 340, 387, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 312, 332, 346
HpyF3I CTNAG 4 cut(s) 146, 267, 438, 462
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 3 cut(s) 79, 203, 391
KpnI GGTACC 1 cut(s) 347
Kzo9I GATC 3 cut(s) 3, 9, 79
LmnI GCTCC 3 cut(s) 64, 72, 95
LpnPI CCDG 6 cut(s) 20, 129, 225, 326, 396, 428
LweI GCATC 2 cut(s) 313, 400
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 105
MalI GATC 3 cut(s) 5, 11, 81
MboI GATC 3 cut(s) 3, 9, 79
MboII GAAGA 2 cut(s) 116, 134
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 3 cut(s) 69, 266, 337
MluCI AATT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 393
MslI CAYNNNNRTG 2 cut(s) 44, 399
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 312, 332, 346
NciI CCSGG 1 cut(s) 116
NdeII GATC 3 cut(s) 3, 9, 79
NlaIII CATG 3 cut(s) 79, 203, 391
NlaIV GGNNCC 3 cut(s) 97, 210, 345
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 44
PaeI GCATGC 1 cut(s) 391
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 293, 425
PflFI GACNNNGTC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 97, 210, 345
PstI CTGCAG 1 cut(s) 342
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 251
RsaI GTAC 2 cut(s) 224, 345
RsaNI GTAC 2 cut(s) 223, 344
RseI CAYNNNNRTG 2 cut(s) 44, 399
SacI GAGCTC 1 cut(s) 69
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 3 cut(s) 3, 9, 79
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 69, 266, 337
SetI ASST 7 cut(s) 69, 210, 217, 255, 308, 345, 444
SfaNI GCATC 2 cut(s) 313, 400
SfcI CTRYAG 2 cut(s) 216, 338
SmiMI CAYNNNNRTG 2 cut(s) 44, 399
SphI GCATGC 1 cut(s) 391
Sse9I AATT 1 cut(s) 277
SsiI CCGC 2 cut(s) 347, 350
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 255
TasI AATT 1 cut(s) 277
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 2 cut(s) 293, 425
TscAI CASTG 3 cut(s) 20, 337, 389
TspDTI ATGAA 3 cut(s) 45, 71, 359
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 3 cut(s) 20, 337, 389
Tth111I GACNNNGTC 1 cut(s) 251
Van91I CCANNNNNTGG 1 cut(s) 43
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 391
ZraI GACGTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.