Rmu_sc0012870.1_g000004

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012870.1
OG0001467
Physical Location & Seq
Reverse (-)
34248 .. 35325
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012870.1_g000004.1.cds

Sequence Viewer

Length: 480 bp
atggcgaagcaatctaaagccaagaaatcggagaatttgggaaagtgtactgtcaccccgtcaagatcgccttcctcgtcagccattttctctttgataacagctacaccgaagcctgctttgttttctgaactgaagcctcctcactattctctacgtctccgattcaagagttgcttcttctacgaagtcgtttgggagctcgaagaagatgtgtgggtttggaaggagagcaagcaggtcatgacggccgccgtggagagaggctggaacaccttcctgtttcaaagtcagaaactcgccgatgactggtcttatcctcttttgatcaaagagggagggattttcgatagcgagaacacgagagttgccacagttgttgaggtttccaatcccaaagagttggaagagcttcaacccgaaaacgaggtggctgagaatgttgttgatgatttgctggattggcaggtgaggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

159

Amino Acids

18.26

Weight (kDa)

5.05

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 457
Acc36I ACCTGC 2 cut(s) 229, 457
AciI CCGC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 3 cut(s) 169, 287, 416
AluBI AGCT 3 cut(s) 104, 202, 412
AluI AGCT 3 cut(s) 104, 202, 412
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 2 cut(s) 275, 411
AsuHPI GGTGA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 204
BauI CACGAG 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 204
BceAI ACGGC 2 cut(s) 239, 264
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 164
BfuAI ACCTGC 2 cut(s) 229, 457
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 132
BseX3I CGGCCG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 251
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 65, 327
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 243
BspMI ACCTGC 2 cut(s) 229, 457
BspQI GCTCTTC 1 cut(s) 402
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 2 cut(s) 65, 327
BssSI CACGAG 1 cut(s) 361
Bst2BI CACGAG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 52, 376
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 117, 236
BstDEI CTNAG 1 cut(s) 435
BstDSI CCRYGG 1 cut(s) 255
BstKTI GATC 2 cut(s) 68, 330
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 65, 327
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 403
BstZI CGGCCG 1 cut(s) 249
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 255
BveI ACCTGC 2 cut(s) 229, 457
Cac8I GCNNGC 2 cut(s) 117, 236
CciI TCATGA 1 cut(s) 243
Csp6I GTAC 1 cut(s) 48
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 1 cut(s) 244
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 435
DpnI GATC 2 cut(s) 67, 329
DpnII GATC 2 cut(s) 65, 327
EaeI YGGCCR 1 cut(s) 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 202
EclXI CGGCCG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FalI AAGNNNNNCTT 4 cut(s) 55, 87, 161, 193
FatI CATG 1 cut(s) 243
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 1 cut(s) 247
HinfI GANTC 1 cut(s) 165
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 4 cut(s) 31, 130, 164, 294
Hpy188III TCNNGA 3 cut(s) 63, 169, 244
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 3 cut(s) 81, 220, 286
HpyCH4III ACNGT 2 cut(s) 52, 376
HpyCH4IV ACGT 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 2 cut(s) 65, 327
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 7 cut(s) 129, 224, 253, 293, 295, 443, 452
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 67, 329
MboI GATC 2 cut(s) 65, 327
MboII GAAGA 4 cut(s) 172, 218, 221, 419
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 384
MroXI GAANNNNTTC 2 cut(s) 275, 411
MwoI GCNNNNNNNGC 1 cut(s) 463
NdeII GATC 2 cut(s) 65, 327
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 52
PagI TCATGA 1 cut(s) 243
PaqCI CACCTGC 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PdmI GAANNNNTTC 2 cut(s) 275, 411
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 204
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 402
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 65, 327
SduI GDGCHC 1 cut(s) 204
Sse9I AATT 1 cut(s) 34
SsiI CCGC 1 cut(s) 252
SstI GAGCTC 1 cut(s) 204
TaaI ACNGT 2 cut(s) 52, 376
TaiI ACGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 204, 348
TasI AATT 1 cut(s) 34
TatI WGTACW 1 cut(s) 47
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 1 cut(s) 165
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
XapI RAATTY 1 cut(s) 34
XmnI GAANNNNTTC 2 cut(s) 275, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.