Rh4BG102900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001467
Physical Location & Seq
Forward (+)
17725896 .. 17754970
29075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG102900.1

Sequence Viewer

Length: 324 bp
ATGGAAGATTACTCGTTGCCTGAGGATTTGACAGCTCAAGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCTGCAGGTTCCGCTTATATCTGGGAGTGGGCTTGTTGTGGCATCTCTTACAGAGTGGCATCTTCCAGAGAAATACTGGACGAGGAAGAGCAAACCAAGGAATGGTCTCTGATAATGATTCTGGAAATGAGTCCGATGAACAGCTTATTGTTGTTCACAGTTCACATGAGCCTCAATGTTGCCAAGTTAGATGCGAAGAAGAGGAACAACCTTATGGAAGACAATATGCCTAATATTATCCAACTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.11

Weight (kDa)

4.61

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 174
AciI CCGC 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 174
AluBI AGCT 5 cut(s) 35, 53, 74, 216, 321
AluI AGCT 5 cut(s) 35, 53, 74, 216, 321
Alw26I GTCTC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 53, 74
AxyI CCTNAGG 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 40, 61
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 54, 75
BlsI GCNGC 2 cut(s) 55, 76
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 3 cut(s) 123, 140, 253
BpiI GAAGAC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 59, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 59, 168
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 40, 61
BsgI GTGCAG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 183
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 59, 168
BssT1I CCWWGG 2 cut(s) 59, 168
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 153, 266
BstDEI CTNAG 2 cut(s) 21, 317
BstMAI GTCTC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 40, 61
BstV2I GAAGAC 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 45
CviAII CATG 1 cut(s) 238
CviJI RGCY 7 cut(s) 35, 53, 74, 104, 216, 243, 321
CviKI_1 RGCY 7 cut(s) 35, 53, 74, 104, 216, 243, 321
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 2 cut(s) 21, 317
Eam1104I CTCTTC 2 cut(s) 153, 266
EarI CTCTTC 2 cut(s) 153, 266
Eco130I CCWWGG 2 cut(s) 59, 168
Eco31I GGTCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 59, 168
ErhI CCWWGG 2 cut(s) 59, 168
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 90, 239, 287, 299
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 54, 75
Fsp4HI GCNGC 2 cut(s) 54, 75
FspBI CTAG 1 cut(s) 322
GluI GCNGC 2 cut(s) 54, 75
Hin1II CATG 1 cut(s) 241
HinfI GANTC 2 cut(s) 190, 202
Hpy166II GTNNAC 2 cut(s) 228, 235
Hpy188I TCNGA 2 cut(s) 183, 207
Hpy188III TCNNGA 3 cut(s) 38, 138, 194
Hpy8I GTNNAC 2 cut(s) 228, 235
HpyAV CCTTC 2 cut(s) 35, 61
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 56, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 21, 317
Hsp92II CATG 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 33, 63, 79, 134, 151, 179
Lsp1109I GCAGC 2 cut(s) 40, 61
LweI GCATC 3 cut(s) 123, 140, 253
MaeI CTAG 1 cut(s) 322
MboII GAAGA 7 cut(s) 17, 76, 126, 170, 280, 283, 302
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 4 cut(s) 16, 148, 254, 267
MwoI GCNNNNNNNGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 174
PkrI GCNGC 2 cut(s) 55, 76
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 82
PstI CTGCAG 1 cut(s) 79
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 2 cut(s) 54, 75
SchI GAGTC 1 cut(s) 211
SetI ASST 8 cut(s) 37, 46, 55, 76, 82, 218, 285, 323
SfaNI GCATC 3 cut(s) 123, 140, 253
SfcI CTRYAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SsiI CCGC 1 cut(s) 84
SspI AATATT 1 cut(s) 307
SspMI CTAG 1 cut(s) 322
StyI CCWWGG 2 cut(s) 59, 168
TaaI ACNGT 1 cut(s) 232
TfiI GAWTC 1 cut(s) 190
TseI GCWGC 2 cut(s) 53, 74
TspDTI ATGAA 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.