Rh1DG270500

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001467
Physical Location & Seq
Reverse (-)
48617149 .. 48619807
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG270500.1

Sequence Viewer

Length: 372 bp
ATGGAAACCAAGGCCACCCAGAGTTCATCAGTTGCTTCTTCTACGACGTCATTTGGGAGCTCGAAGAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGACCGCCGTGGAGAGAGGCTGGAACACCTTCCTGTTTCAAAGTCAGAAACTCGCCGATGACTGGTCTTTGATTGCGTTGATAAATCCTCTTTTGATCAAAGACGGAGGGATTTTCGATAGCGAGAACACGAGAGTTGCCACAGTTGTTGAGGTTTCCAATCCCAAAGAGTTGGAAGAGCTTCAACCAGAAAACGGGGTGGCTAAGAATGTTGTTGTTGATTTGCTGGATTGGCAGATGTCACCTGTCAGTTCTTCTTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

4.76

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHQS PF01959 22 - 117 3.5e-19 3-dehydroquinate synthase II N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 168, 299
AgsI TTSAA 3 cut(s) 146, 290, 367
AluBI AGCT 2 cut(s) 60, 286
AluI AGCT 2 cut(s) 60, 286
Alw21I GWGCWC 1 cut(s) 62
AoxI GGCC 1 cut(s) 12
Asp700I GAANNNNTTC 2 cut(s) 134, 285
AsuHPI GGTGA 1 cut(s) 339
BanII GRGCYC 1 cut(s) 62
BauI CACGAG 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 9, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 299
Bse1I ACTGG 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 9, 114
BseLI CCNNNNNNNGG 2 cut(s) 168, 299
BseNI ACTGG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 168, 299
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 14
BspHI TCATGA 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 276
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 9, 114
BssMI GATC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 47
BssSI CACGAG 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 73, 250
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 102
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 14, 60, 126, 286, 308
CviKI_1 RGCY 5 cut(s) 14, 60, 126, 286, 308
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 106
FaiI YATR 1 cut(s) 104
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 106
HphI GGTGA 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 73, 250
HpyCH4IV ACGT 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 1 cut(s) 201
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 8 cut(s) 32, 83, 112, 152, 154, 306, 317, 363
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 345
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 5 cut(s) 30, 76, 79, 293, 351
MhlI GDGCHC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 4 cut(s) 116, 204, 206, 250
MroXI GAANNNNTTC 2 cut(s) 134, 285
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 345
PagI TCATGA 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 276
PdmI GAANNNNTTC 2 cut(s) 134, 285
Psp124BI GAGCTC 1 cut(s) 62
SacI GAGCTC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 62
SetI ASST 7 cut(s) 50, 62, 102, 137, 261, 288, 352
SsiI CCGC 1 cut(s) 111
SstI GAGCTC 1 cut(s) 62
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 73, 250
TaiI ACGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 62, 222
TseFI GTSAC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 2 cut(s) 101, 225
XmnI GAANNNNTTC 2 cut(s) 134, 285
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.