Rroxscaffold_1G00038180

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001467
Physical Location & Seq
Forward (+)
55618615 .. 55624312
5698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038180.1

Sequence Viewer

Length: 294 bp
ATGATCCCGATCCACCGGGCATTCGCCGATGAAACCCGCACGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCTTCGGAGCCAAGTCGTTACCCAACCCGCCACTCTTCGCAAAAGCTTCTCCGGATCGTAAATCACTATCATCATTCGAACTGGAAATGATATACTATATTGGTAAATACACGAAGAGATTGTCTATTGCAGCGCTTCAATCCGCAAATTTCCAACACATAATGGTTGGTGGTATAAAGGATGGGCAAGCTGTTTCCGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

9.52

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 3 cut(s) 37, 116, 231
AclWI GGATC 3 cut(s) 4, 87, 150
AcsI RAATTY 1 cut(s) 235
AfeI AGCGCT 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 43, 76
AgsI TTSAA 1 cut(s) 227
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 3 cut(s) 67, 134, 278
AluI AGCT 3 cut(s) 67, 134, 278
Alw21I GWGCWC 1 cut(s) 69
AlwI GGATC 3 cut(s) 4, 87, 150
Aor13HI TCCGGA 1 cut(s) 139
Aor51HI AGCGCT 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 235
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspLEI GCGC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 165
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 263
BcnI CCSGG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 76
Bse1I ACTGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 139
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 43, 76
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 16, 140
BslI CCNNNNNNNGG 2 cut(s) 43, 76
BsmI GAATGC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 69
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 4 cut(s) 3, 9, 79, 142
BspACI CCGC 3 cut(s) 37, 116, 231
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 3 cut(s) 4, 87, 150
BspT104I TTCGAA 1 cut(s) 165
BsrI ACTGG 1 cut(s) 174
BssMI GATC 4 cut(s) 3, 9, 79, 142
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 128, 197
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 276
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 4 cut(s) 6, 12, 82, 145
BstMBI GATC 4 cut(s) 3, 9, 79, 142
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 223
CviAII CATG 1 cut(s) 76
CviJI RGCY 4 cut(s) 67, 98, 134, 278
CviKI_1 RGCY 4 cut(s) 67, 98, 134, 278
DpnI GATC 4 cut(s) 5, 11, 81, 144
DpnII GATC 4 cut(s) 3, 9, 79, 142
Eam1104I CTCTTC 2 cut(s) 128, 197
EarI CTCTTC 2 cut(s) 128, 197
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco47III AGCGCT 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 1 cut(s) 79
FaiI YATR 5 cut(s) 77, 181, 186, 248, 263
FatI CATG 1 cut(s) 75
FauI CCCGC 2 cut(s) 44, 123
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 219
GlaI GCGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 224
HapII CCGG 2 cut(s) 16, 140
HhaI GCGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 132
HpaII CCGG 2 cut(s) 16, 140
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 64, 95, 286
Hpy188III TCNNGA 2 cut(s) 7, 140
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 218
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 221
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 3, 9, 79, 142
LmnI GCTCC 3 cut(s) 64, 72, 95
LpnPI CCDG 3 cut(s) 29, 153, 155
Lsp1109I GCAGC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 105
MalI GATC 4 cut(s) 5, 11, 81, 144
MboI GATC 4 cut(s) 3, 9, 79, 142
MboII GAAGA 2 cut(s) 115, 214
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 1 cut(s) 80
MroI TCCGGA 1 cut(s) 139
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 2 cut(s) 16, 140
MspR9I CCNGG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 17
NdeII GATC 4 cut(s) 3, 9, 79, 142
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 97
NspV TTCGAA 1 cut(s) 165
OliI CACNNNNGTG 1 cut(s) 44
PctI GAATGC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 69
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 4 cut(s) 3, 9, 79, 142
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 69
SetI ASST 3 cut(s) 69, 136, 280
SfuI TTCGAA 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 1 cut(s) 235
SsiI CCGC 3 cut(s) 37, 116, 231
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 235
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 45, 71
XapI RAATTY 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.