Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001467

Physical Location & Seq

Genomic Coordinates Reverse (-)

59010427 .. 59012821

Gene Structure 2395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009858

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGAAGCAATCTAAAGCCAAGAAATCGGAGAATTTGGGAAAGTGTACCGTCACCCCCGTCCAGATCGCCTTCCTCGTCAGCCAGCTTCTCTTTGATAACAGCTACACCGATTCTGAACTGAAGCCTCCTCACTCTTCTCTACGTCTCCGATTCAAGAGATTGATTTCTTCACATAATAAACACCCAATGGAAACCAAGGCCACCCAGAGTTCATCAGTTGCTTCTTCTACGACATCGTTTGGGAGCTCGAAGAAGATGGTGTGGGTTTGGAAGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACCTTCCTGTTTCAGAGTCAGAAACTCACCGATGACTGGTCTTCGATTGCGTTGATAGATCCTCTTTTGATCAAAGAGAGAGGGATTTTCGATAGCGAGAACACGAGAGTTGCCACAGTTGTTGAGGTTTCCAATCCCAAAGAGTTGGAAGAGCTTCAACCCAAAAACGGGGTGGCTGAGAATGTTGTTGTTGATTTGCTGGATTGGCAGGCAGGTGAGCTTATGAAATTTGAGTACCAAAAGAAGGTCGCCTCGCTGAGCAAGCTAAAGAAATGTAGTACTAACTCAGAAGCATTGGAGAAATCAAGAGCAGCAGTGAGTCATCTGCATATAAGATACATAGTTGACATGCAATCCATGGACCCAACAGTATCAAAGATAAACTCTTTTACTTTCAGCCTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHQS

Protein Analysis

243

Amino Acids

27.23

Weight (kDa)

9.3

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQS	PF01959	85 - 177	5.9e-17	3-dehydroquinate synthase II N-terminal domain
DUF632	PF04782	178 - 236	9.9e-12	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49050
malus_domestica	MD00G1026200.v1.1 MD00G1027200.v1.1 MD00G1027300.v1.1 MD02G1040400.v1.1 MD02G1040800.v1.1 MD02G1041100.v1.1 MD02G1041500.v1.1 MD02G1041600.v1.1 MD11G1046200.v1.1 MD15G1234700.v1.1
pyrus_communis	pycom02g03190 pycom02g03430 pycom02g03440 pycom09g10760 pycom09g12970
rosa_chinensis	RchiOBHm_Chr1g0367931
rosa_laevigata	RLG00000009858 RLG00000017790 RLG00000029248 RLG00000036011
rosa_multiflora	Rmu_sc0000243.1_g000024 Rmu_sc0007790.1_g000006 Rmu_sc0012870.1_g000004
rosa_roxburghii	Rroxscaffold_1G00037580 Rroxscaffold_1G00038180 Rroxscaffold_1G00049490 Rroxscaffold_2G00089170 Rroxscaffold_2G00095040 Rroxscaffold_2G00127190 Rroxscaffold_3G00227090 Rroxscaffold_4G00301620
rosa_rugosa	Rorug02G0254800 Rorug03G0325900 Rorug05G0157000 Rorug05G0237600
rosa_samantha	Rh1BG165600 Rh1BG241700 Rh1DG196200 Rh1DG270500 Rh2BG468700 Rh2CG265400 Rh2CG401400 Rh3CG316000 Rh3DG350500 Rh4BG102900 Rh4DG196700 Rh5CG562400 Rh5DG264100 Rh7DG148300 Rh7DG240400
rosa_wichuraiana	Rw5G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	277, 524
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	34, 548
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	49, 557, 601
AfiI	CCNNNNNNNGG	4 cut(s)	357, 488, 489, 565
AgsI	TTSAA	2 cut(s)	157, 479
AluBI	AGCT	6 cut(s)	88, 105, 249, 475, 541, 586
AluI	AGCT	6 cut(s)	88, 105, 249, 475, 541, 586
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	2 cut(s)	201, 297
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	2 cut(s)	34, 548
Asp700I	GAANNNNTTC	2 cut(s)	323, 474
AspS9I	GGNCC	1 cut(s)	682
AsuHPI	GGTGA	3 cut(s)	46, 340, 548
AvaII	GGWCC	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	644
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	287, 312
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	277, 524
BisI	GCNGC	2 cut(s)	300, 633
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	2 cut(s)	301, 634
BmcAI	AGTACT	1 cut(s)	601
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	198, 303, 678
Bsc4I	CCNNNNNNNGG	4 cut(s)	357, 488, 489, 565
Bse1I	ACTGG	1 cut(s)	362
BseDI	CCNNGG	3 cut(s)	198, 303, 678
BseLI	CCNNNNNNNGG	4 cut(s)	357, 488, 489, 565
BseMII	CTCAG	3 cut(s)	489, 569, 621
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	203, 299
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	251
BslI	CCNNNNNNNGG	4 cut(s)	357, 488, 489, 565
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	203, 299
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	66, 379, 390
Bsp1720I	GCTNAGC	1 cut(s)	578
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	203, 299
BspCNI	CTCAG	3 cut(s)	490, 570, 620
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	684
BspMI	ACCTGC	2 cut(s)	277, 524
BspPI	GGATC	1 cut(s)	374
BspQI	GCTCTTC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	198, 303, 678
BssMI	GATC	3 cut(s)	66, 379, 390
BssSI	CACGAG	1 cut(s)	424
BssT1I	CCWWGG	2 cut(s)	198, 678
Bst2BI	CACGAG	1 cut(s)	424
Bst4CI	ACNGT	3 cut(s)	52, 439, 691
Bst6I	CTCTTC	2 cut(s)	142, 465
BstC8I	GCNNGC	4 cut(s)	86, 284, 531, 584
BstDEI	CTNAG	3 cut(s)	498, 578, 607
BstDSI	CCRYGG	2 cut(s)	303, 678
BstKTI	GATC	3 cut(s)	69, 382, 393
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	66, 379, 390
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 583
BstNSI	RCATGY	1 cut(s)	673
BstV1I	GCAGC	1 cut(s)	644
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	379
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	379
BstZI	CGGCCG	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	203, 299
BtgI	CCRYGG	2 cut(s)	303, 678
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	2 cut(s)	277, 524
Cac8I	GCNNGC	4 cut(s)	86, 284, 531, 584
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	48, 556, 600
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	3 cut(s)	292, 670, 679
CviQI	GTAC	3 cut(s)	48, 556, 600
DdeI	CTNAG	3 cut(s)	498, 578, 607
DpnI	GATC	3 cut(s)	68, 381, 392
DpnII	GATC	3 cut(s)	66, 379, 390
EaeI	YGGCCR	1 cut(s)	297
EagI	CGGCCG	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	142, 465
EarI	CTCTTC	2 cut(s)	142, 465
Ecl136II	GAGCTC	1 cut(s)	249
EclXI	CGGCCG	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	198, 678
Eco24I	GRGCYC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	682
Eco52I	CGGCCG	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	249
EcoT14I	CCWWGG	2 cut(s)	198, 678
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	2 cut(s)	198, 678
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	3 cut(s)	295, 673, 682
FaiI	YATR	8 cut(s)	177, 293, 545, 651, 653, 662, 671, 680
FatI	CATG	3 cut(s)	291, 669, 678
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	300, 633
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	300, 633
GluI	GCNGC	2 cut(s)	300, 633
HaeIII	GGCC	2 cut(s)	203, 299
Hin1II	CATG	3 cut(s)	295, 673, 682
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	4 cut(s)	113, 153, 337, 640
HphI	GGTGA	3 cut(s)	46, 340, 548
Hpy166II	GTNNAC	2 cut(s)	48, 667
Hpy188I	TCNGA	6 cut(s)	31, 118, 152, 336, 342, 610
Hpy188III	TCNNGA	4 cut(s)	64, 157, 292, 627
Hpy8I	GTNNAC	2 cut(s)	48, 667
HpyAV	CCTTC	4 cut(s)	82, 268, 334, 559
HpyCH4III	ACNGT	3 cut(s)	52, 439, 691
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	649, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 583
HpyF3I	CTNAG	3 cut(s)	498, 578, 607
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	295, 673, 682
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	66, 379, 390
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	644
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	68, 381, 392
MboI	GATC	3 cut(s)	66, 379, 390
MboII	GAAGA	7 cut(s)	129, 162, 219, 265, 268, 354, 482
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	2 cut(s)	34, 548
MlyI	GAGTC	2 cut(s)	346, 649
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	8 cut(s)	86, 138, 141, 305, 393, 395, 439, 583
MroXI	GAANNNNTTC	2 cut(s)	323, 474
MwoI	GCNNNNNNNGC	2 cut(s)	526, 583
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	3 cut(s)	66, 379, 390
NlaIII	CATG	3 cut(s)	295, 673, 682
NlaIV	GGNNCC	1 cut(s)	684
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	673
PagI	TCATGA	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	524
PciSI	GCTCTTC	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	2 cut(s)	323, 474
PfeI	GAWTC	2 cut(s)	113, 153
PkrI	GCNGC	2 cut(s)	301, 634
PleI	GAGTC	2 cut(s)	345, 648
PpsI	GAGTC	2 cut(s)	345, 648
Psp124BI	GAGCTC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	684
PspPI	GGNCC	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	3 cut(s)	49, 557, 601
RsaNI	GTAC	3 cut(s)	48, 556, 600
SacI	GAGCTC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	465
SatI	GCNGC	2 cut(s)	300, 633
Sau3AI	GATC	3 cut(s)	66, 379, 390
Sau96I	GGNCC	1 cut(s)	682
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	2 cut(s)	346, 649
SduI	GDGCHC	1 cut(s)	251
SinI	GGWCC	1 cut(s)	682
Sse9I	AATT	2 cut(s)	34, 548
SsiI	CCGC	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	198, 678
TaaI	ACNGT	3 cut(s)	52, 439, 691
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	251, 365, 411
TasI	AATT	2 cut(s)	34, 548
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	113, 153
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	204, 560
TspRI	CASTG	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	682
XapI	RAATTY	2 cut(s)	34, 548
XceI	RCATGY	1 cut(s)	673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmnI	GAANNNNTTC	2 cut(s)	323, 474
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.