Rh5CG562400

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001467
Physical Location & Seq
Reverse (-)
79008699 .. 79012558
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG562400.1

Sequence Viewer

Length: 309 bp
ATGATCCTGATCCACTGGGCATTCGTCGACGAAACCCGCATGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCGTCGGAGACAAGTCGTTACCCAACCCGGCCACTCTTCGCAAGTCATCTCATCTTCTCGGTCCCAAAGTACCGCTGCCATTTTCTGCCTTCATTCATCTATGTAAACACTGCATGCATCATACAAATGATGGTTCTGGTGCTTGTTTTGAATCAGAACGGACTGAGCTGGGGAAAAGACTCTCCCACTTAGATTCGATTCCGGTTGAGACTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

102

Amino Acids

11.42

Weight (kDa)

7.05

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AciI CCGC 2 cut(s) 37, 161
AclWI GGATC 2 cut(s) 4, 87
AcoI YGGCCR 1 cut(s) 117
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 2 cut(s) 43, 76
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 2 cut(s) 67, 256
AluI AGCT 2 cut(s) 67, 256
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 90, 290
AlwI GGATC 2 cut(s) 4, 87
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 212
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 2 cut(s) 90, 290
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 76
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 43, 76
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 116, 290
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 43, 76
BsmAI GTCTC 2 cut(s) 90, 290
BsmFI GGGAC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 3, 9, 79
BspACI CCGC 2 cut(s) 37, 161
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 2 cut(s) 4, 87
BsrI ACTGG 1 cut(s) 20
BssMI GATC 3 cut(s) 3, 9, 79
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 252, 277
BstKTI GATC 3 cut(s) 6, 12, 82
BstMAI GTCTC 2 cut(s) 90, 290
BstMBI GATC 3 cut(s) 3, 9, 79
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 13, 196
Cac8I GCNNGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 158
CviAII CATG 3 cut(s) 40, 76, 202
CviJI RGCY 3 cut(s) 67, 119, 256
CviKI_1 RGCY 3 cut(s) 67, 119, 256
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 2 cut(s) 252, 277
DpnI GATC 3 cut(s) 5, 11, 81
DpnII GATC 3 cut(s) 3, 9, 79
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 3 cut(s) 43, 79, 205
FaiI YATR 5 cut(s) 41, 77, 190, 203, 210
FaqI GGGAC 1 cut(s) 135
FatI CATG 3 cut(s) 39, 75, 201
FauI CCCGC 1 cut(s) 44
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 116, 290
Hin1II CATG 3 cut(s) 43, 79, 205
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 4 cut(s) 239, 267, 281, 286
HpaII CCGG 2 cut(s) 116, 290
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 28, 194
Hpy188I TCNGA 3 cut(s) 64, 95, 244
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 2 cut(s) 28, 194
Hpy99I CGWCG 3 cut(s) 29, 32, 95
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 201, 205
HpyF3I CTNAG 2 cut(s) 252, 277
Hsp92II CATG 3 cut(s) 43, 79, 205
Kzo9I GATC 3 cut(s) 3, 9, 79
LmnI GCTCC 2 cut(s) 64, 72
LpnPI CCDG 5 cut(s) 20, 129, 210, 242, 303
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 105
MalI GATC 3 cut(s) 5, 11, 81
MboI GATC 3 cut(s) 3, 9, 79
MboII GAAGA 2 cut(s) 116, 134
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 69
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 207
MslI CAYNNNNRTG 2 cut(s) 44, 213
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 2 cut(s) 116, 290
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 116
NdeII GATC 3 cut(s) 3, 9, 79
NlaIII CATG 3 cut(s) 43, 79, 205
NlaIV GGNNCC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 207
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 3 cut(s) 239, 281, 286
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 2 cut(s) 44, 213
SacI GAGCTC 1 cut(s) 69
SalI GTCGAC 1 cut(s) 26
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 3, 9, 79
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 69
SetI ASST 2 cut(s) 69, 258
SfaNI GCATC 1 cut(s) 214
SgrDI CGTCGACG 1 cut(s) 26
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 44, 213
SphI GCATGC 1 cut(s) 205
SsiI CCGC 2 cut(s) 37, 161
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 114
TaqI TCGA 2 cut(s) 27, 284
TaqII GACCGA 1 cut(s) 137
TfiI GAWTC 3 cut(s) 239, 281, 286
TscAI CASTG 2 cut(s) 20, 203
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 71, 169, 173
TspGWI ACGGA 2 cut(s) 79, 262
TspRI CASTG 2 cut(s) 20, 203
VpaK11BI GGWCC 1 cut(s) 149
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.