Rh2CG265400

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001467
Physical Location & Seq
Forward (+)
28463567 .. 28468475
4909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG265400.1

Sequence Viewer

Length: 774 bp
ATGATCCTGATCCACTGGGCATTTGCCGATGAAACCCGCACGGTGGTGAAGTCAATGAAATCGGAGCTCCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTACCCAACCCGGCCACTCTTCTCAATCAACGACTTTTGAAACTTGGTCAAAGTGATGGACATGGTGAGGTTCCAGCTATAGAGTACTCGCATATCCCTTCGTTCTCAGACGACGTCATTTCGGGCACTAAGCATGATCATGCAGTAAAATTATTGATTTCTTCACATAATAAACACCCAATGGAAACCAAGGCCACCCAGAGTTCATCAGTTGCTTCTTCTACGACGTCGTTTGGGAGCTCGAAGAAGATGGTGTGGGTTTGGACAGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACCTTCCTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTGTGAGCTTATGAAATTTGAGTACCAAAAGAAGGTCGCCTCGCTGAGCAAGCTAAAGAAATGTAGTACTAACTCAGAAGCATTGGAGAAATCAAGAGTAGCACCTGTTGCAGGCTTCTTTGGCTATAACAACCCAAAGGGCAGAGAACTGCCTGAAAGAGCAATGAAGAGAAGCAGCTTGTTGTGGACTAAGAATATTATCTTGCAAAGACCCATTTTATTATGGAAAAGAAACCAACTTGAGACACAGAGCAAGAACAGCAGGGACAAACAACAAACAAGCAAGGTCTATGTTCTTGGAGAGTCAATGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

257

Amino Acids

28.96

Weight (kDa)

9.7

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 222, 335
Acc36I ACCTGC 1 cut(s) 373
AciI CCGC 2 cut(s) 37, 396
AclWI GGATC 2 cut(s) 4, 87
AcoI YGGCCR 2 cut(s) 117, 393
AcsI RAATTY 1 cut(s) 473
AcyI GRCGYC 2 cut(s) 219, 332
AfaI GTAC 3 cut(s) 191, 482, 526
AfiI CCNNNNNNNGG 5 cut(s) 43, 76, 453, 490, 569
AgsI TTSAA 1 cut(s) 145
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 6 cut(s) 67, 182, 345, 466, 511, 636
AluI AGCT 6 cut(s) 67, 182, 345, 466, 511, 636
Alw21I GWGCWC 2 cut(s) 69, 347
Alw26I GTCTC 1 cut(s) 695
AlwI GGATC 2 cut(s) 4, 87
AoxI GGCC 3 cut(s) 117, 297, 393
ApeKI GCWGC 1 cut(s) 633
ApoI RAATTY 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 419
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 58, 182
BaeGI GKGCMC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 69, 347
Bbv12I GWGCWC 2 cut(s) 69, 347
BbvI GCAGC 1 cut(s) 645
BccI CCATC 2 cut(s) 155, 349
BceAI ACGGC 2 cut(s) 383, 408
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 2 cut(s) 396, 634
BlpI GCTNAGC 1 cut(s) 503
BlsI GCNGC 2 cut(s) 397, 635
BmcAI AGTACT 2 cut(s) 191, 526
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 97, 177
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 719
BpuMI CCSGG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 219, 332
BsaJI CCNNGG 2 cut(s) 294, 399
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 76, 453, 490, 569
Bse1I ACTGG 2 cut(s) 20, 458
Bse3DI GCAATG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 294, 399
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 5 cut(s) 43, 76, 453, 490, 569
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 3 cut(s) 225, 494, 546
BseNI ACTGG 2 cut(s) 20, 458
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 233
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 645
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 119, 299, 395
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 69, 347
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 5 cut(s) 43, 76, 453, 490, 569
BsmAI GTCTC 1 cut(s) 695
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 3 cut(s) 119, 299, 395
Bsp1286I GDGCHC 3 cut(s) 69, 233, 347
Bsp143I GATC 4 cut(s) 3, 9, 79, 241
Bsp1720I GCTNAGC 1 cut(s) 503
BspACI CCGC 2 cut(s) 37, 396
BspANI GGCC 3 cut(s) 119, 299, 395
BspCNI CTCAG 3 cut(s) 224, 495, 545
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 97, 177
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 2 cut(s) 4, 87
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 2 cut(s) 20, 458
BssECI CCNNGG 2 cut(s) 294, 399
BssMI GATC 4 cut(s) 3, 9, 79, 241
BssNI GRCGYC 2 cut(s) 219, 332
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 129, 620
BstACI GRCGYC 2 cut(s) 219, 332
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 3 cut(s) 380, 509, 571
BstDEI CTNAG 5 cut(s) 211, 234, 503, 532, 648
BstDSI CCRYGG 1 cut(s) 399
BstENI CCTNNNNNAGG 1 cut(s) 567
BstKTI GATC 4 cut(s) 6, 12, 82, 244
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 4 cut(s) 3, 9, 79, 241
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 4 cut(s) 508, 566, 579, 717
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BstZI CGGCCG 1 cut(s) 393
BsuRI GGCC 3 cut(s) 119, 299, 395
BtgI CCRYGG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 13
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 380, 509, 571
CciI TCATGA 1 cut(s) 387
Csp6I GTAC 3 cut(s) 190, 481, 525
CviAII CATG 6 cut(s) 76, 167, 239, 245, 388, 771
CviQI GTAC 3 cut(s) 190, 481, 525
DdeI CTNAG 5 cut(s) 211, 234, 503, 532, 648
DpnI GATC 4 cut(s) 5, 11, 81, 243
DpnII GATC 4 cut(s) 3, 9, 79, 241
EaeI YGGCCR 2 cut(s) 117, 393
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 129, 620
EarI CTCTTC 2 cut(s) 129, 620
Ecl136II GAGCTC 2 cut(s) 67, 345
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 69, 347
Eco52I CGGCCG 1 cut(s) 393
Eco53kI GAGCTC 2 cut(s) 67, 345
EcoICRI GAGCTC 2 cut(s) 67, 345
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 2 cut(s) 69, 347
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 6 cut(s) 79, 170, 242, 248, 391, 774
FaqI GGGAC 1 cut(s) 737
FatI CATG 6 cut(s) 75, 166, 238, 244, 387, 770
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 396, 634
FriOI GRGCYC 2 cut(s) 69, 347
Fsp4HI GCNGC 2 cut(s) 396, 634
GluI GCNGC 2 cut(s) 396, 634
HaeIII GGCC 3 cut(s) 119, 299, 395
HapII CCGG 1 cut(s) 116
Hin1I GRCGYC 2 cut(s) 219, 332
Hin1II CATG 6 cut(s) 79, 170, 242, 248, 391, 774
HinfI GANTC 2 cut(s) 433, 761
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 58, 182
Hpy166II GTNNAC 1 cut(s) 645
Hpy188I TCNGA 6 cut(s) 64, 95, 214, 432, 438, 535
Hpy188III TCNNGA 3 cut(s) 7, 388, 552
Hpy8I GTNNAC 1 cut(s) 645
Hpy99I CGWCG 4 cut(s) 95, 221, 334, 337
HpyAV CCTTC 3 cut(s) 213, 430, 484
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 219, 332
HpyCH4V TGCA 3 cut(s) 248, 569, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 508, 566, 579, 717
HpyF3I CTNAG 5 cut(s) 211, 234, 503, 532, 648
HpySE526I ACGT 2 cut(s) 219, 332
Hsp92I GRCGYC 2 cut(s) 219, 332
Hsp92II CATG 6 cut(s) 79, 170, 242, 248, 391, 774
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 3, 9, 79, 241
LmnI GCTCC 4 cut(s) 64, 72, 95, 342
Lsp1109I GCAGC 1 cut(s) 645
MaeII ACGT 2 cut(s) 219, 332
MaeIII GTNAC 1 cut(s) 105
MalI GATC 4 cut(s) 5, 11, 81, 243
MboI GATC 4 cut(s) 3, 9, 79, 241
MboII GAAGA 6 cut(s) 116, 258, 315, 361, 364, 637
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 3 cut(s) 69, 233, 347
MluCI AATT 2 cut(s) 254, 473
MlyI GAGTC 2 cut(s) 442, 770
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 80, 166, 401, 508
MroXI GAANNNNTTC 1 cut(s) 419
MslI CAYNNNNRTG 2 cut(s) 44, 243
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 508, 566, 579, 717
NciI CCSGG 1 cut(s) 116
NdeII GATC 4 cut(s) 3, 9, 79, 241
NlaIII CATG 6 cut(s) 79, 170, 242, 248, 391, 774
NlaIV GGNNCC 2 cut(s) 97, 177
OliI CACNNNNGTG 1 cut(s) 44
PagI TCATGA 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 397, 635
PleI GAGTC 2 cut(s) 441, 769
PpsI GAGTC 2 cut(s) 441, 769
Psp124BI GAGCTC 2 cut(s) 69, 347
PspN4I GGNNCC 2 cut(s) 97, 177
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 3 cut(s) 191, 482, 526
RsaNI GTAC 3 cut(s) 190, 481, 525
RseI CAYNNNNRTG 2 cut(s) 44, 243
SacI GAGCTC 2 cut(s) 69, 347
SatI GCNGC 2 cut(s) 396, 634
Sau3AI GATC 4 cut(s) 3, 9, 79, 241
ScaI AGTACT 2 cut(s) 191, 526
SchI GAGTC 2 cut(s) 442, 770
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 69, 233, 347
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 44, 243
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
Sse9I AATT 2 cut(s) 254, 473
SsiI CCGC 2 cut(s) 37, 396
SspI AATATT 1 cut(s) 655
SstI GAGCTC 2 cut(s) 69, 347
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 222, 335
TaqI TCGA 1 cut(s) 347
TasI AATT 2 cut(s) 254, 473
TatI WGTACW 2 cut(s) 189, 524
TauI GCSGC 1 cut(s) 398
TscAI CASTG 1 cut(s) 20
TseI GCWGC 1 cut(s) 633
TspDTI ATGAA 5 cut(s) 45, 71, 300, 485, 638
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 20
Tth111I GACNNNGTC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 419
ZraI GACGTC 2 cut(s) 220, 333
ZrmI AGTACT 2 cut(s) 191, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.