RLG00000017790

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
21245328 .. 21251564
6237 bp
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UTR
Exon/CDS
Intron
RLM00000017790

Sequence Viewer

Length: 369 bp
ATGGAGACCGCTGTGCCTCCAATCTCCATCACTCGAAACTTTTCTCACATCGCTTCTCATTCACGACTCACAGTCTCACATCGATCTTTTGATCCTCTCCCTTCAACTCACTTTCTTCGTCTTCCTCTTGATAGAAGGGCATTCTTGCAGCCTCGCAAACCTATATATGAGAATTACTCGTTGCCTGCGGATTTGATAGCTCAGGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCTGGGAGTGGGCTTGTTGTGGCATCTCTTACAGAGTGGCATCTTCTAGAGAAATATTGGGGTTACAACCGATTTGTCAGAAGAGCAGCCCTTATCAATTGTGTAAACACTGCGATAGTCCTTCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.76

Weight (kDa)

10.0

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 188
AclWI GGATC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 1 cut(s) 105
AhdI GACNNNNNGTC 1 cut(s) 71
AluBI AGCT 3 cut(s) 200, 218, 239
AluI AGCT 3 cut(s) 200, 218, 239
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 148, 218, 323
Asp700I GAANNNNTTC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 160, 205, 335
BccI CCATC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 149, 219, 324
BlsI GCNGC 3 cut(s) 150, 220, 325
BmeRI GACNNNNNGTC 1 cut(s) 71
BmsI GCATC 2 cut(s) 269, 286
BpiI GAAGAC 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 161, 193
Bpu10I CCTNAGC 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 215
BseXI GCAGC 3 cut(s) 160, 205, 335
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 204
BshVI ATCGAT 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 83, 91
BspACI CCGC 2 cut(s) 9, 188
BspCNI CTCAG 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 82
BspPI GGATC 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 83, 91
BssT1I CCWWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 201
BstKTI GATC 2 cut(s) 86, 94
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 83, 91
BstV1I GCAGC 3 cut(s) 160, 205, 335
BstV2I GAAGAC 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 82
BsuTUI ATCGAT 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 82
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 6 cut(s) 151, 200, 218, 239, 250, 326
CviKI_1 RGCY 6 cut(s) 151, 200, 218, 239, 250, 326
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 85, 93
DpnII GATC 2 cut(s) 83, 91
DriI GACNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 313
Eam1105I GACNNNNNGTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaiI YATR 4 cut(s) 164, 166, 168, 367
Fnu4HI GCNGC 3 cut(s) 149, 219, 324
Fsp4HI GCNGC 3 cut(s) 149, 219, 324
FspBI CTAG 1 cut(s) 284
GluI GCNGC 3 cut(s) 149, 219, 324
GsaI CCCAGC 1 cut(s) 243
HinfI GANTC 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 317, 363
Hpy188III TCNNGA 4 cut(s) 63, 128, 203, 284
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 5 cut(s) 111, 129, 200, 226, 368
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 148, 221
HpyF3I CTNAG 1 cut(s) 201
Kzo9I GATC 2 cut(s) 83, 91
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 3 cut(s) 188, 198, 225
Lsp1109I GCAGC 3 cut(s) 160, 205, 335
LweI GCATC 2 cut(s) 269, 286
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 299
MalI GATC 2 cut(s) 85, 93
MboI GATC 2 cut(s) 83, 91
MboII GAAGA 5 cut(s) 107, 113, 241, 272, 330
MfeI CAATTG 1 cut(s) 334
MluCI AATT 2 cut(s) 172, 334
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 4 cut(s) 27, 105, 135, 162
MroXI GAANNNNTTC 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 11
MunI CAATTG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 140
NdeII GATC 2 cut(s) 83, 91
PciSI GCTCTTC 1 cut(s) 313
PctI GAATGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 150, 220, 325
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 239
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 313
SatI GCNGC 3 cut(s) 149, 219, 324
Sau3AI GATC 2 cut(s) 83, 91
SchI GAGTC 1 cut(s) 60
SetI ASST 5 cut(s) 163, 202, 211, 220, 241
SfaNI GCATC 2 cut(s) 269, 286
Sse9I AATT 2 cut(s) 172, 334
SsiI CCGC 2 cut(s) 9, 188
SspI AATATT 1 cut(s) 293
SspMI CTAG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 34, 82
TasI AATT 2 cut(s) 172, 334
TscAI CASTG 1 cut(s) 352
TseI GCWGC 3 cut(s) 148, 218, 323
TspRI CASTG 1 cut(s) 352
XbaI TCTAGA 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 40
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.