RLG00000029248

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001467
Physical Location & Seq
Reverse (-)
35402434 .. 35404126
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029248

Sequence Viewer

Length: 558 bp
ATGATTCGCGAAGCCAATGGCGACCCCAACAAGGCTAACAAGCCATTCATTTCTTCACATAATAAACACCCAATGGAAACCAAGGCCACCCAGAGTTCATCAGTTGCTTCTTCTACGACATCGTTTGGGAGCTCGAAGAAGACAGTGTGGGTTTGGACGAAGAGCAAGCAGGTCATGACGGCCGCCATGGAGAGAGGTTGGAACACCTTCCTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTCGATTGCGTTGATAGATCCTCTTTTGATCAAAGAGGGAGGGATTTTCGATAGCGAGAACATGAGAGTTGCCACAGTTGTTGAGGTTTCCAATCCCAAAGAGTTGGAAGAGCTTCAACCCGAAAACGGGGTGGCTGAGAATGTTGTTGTTGATTTGTTGGTTTGGCAGGTGATACCTGCGATTCTTATAAGCATGCTTTGGGCATCCTATAACCCAAAGGAGACCAATGATCGATCTCTGTTTGTTTTGCAAGGTATGCGGAAGCAACATGGCTGGGTTTTAGGAAGTGGTTTTCTTGTGCTTTTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

6.84

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHQS PF01959 46 - 142 4.7e-19 3-dehydroquinate synthase II N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 3 cut(s) 160, 403, 430
AccII CGCG 1 cut(s) 9
AciI CCGC 2 cut(s) 183, 505
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 180
AfiI CCNNNNNNNGG 4 cut(s) 31, 240, 371, 372
AgsI TTSAA 1 cut(s) 362
AluBI AGCT 2 cut(s) 132, 358
AluI AGCT 2 cut(s) 132, 358
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 84, 180
Asp700I GAANNNNTTC 2 cut(s) 206, 357
AsuHPI GGTGA 1 cut(s) 427
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 146, 237
Bbv12I GWGCWC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 195
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 461
BfuAI ACCTGC 3 cut(s) 160, 403, 430
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmsI GCATC 1 cut(s) 458
BpiI GAAGAC 2 cut(s) 146, 237
Bsa29I ATCGAT 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 81, 186
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 240, 371, 372
Bse1I ACTGG 1 cut(s) 245
BseCI ATCGAT 1 cut(s) 478
BseDI CCNNGG 2 cut(s) 81, 186
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 4 cut(s) 31, 240, 371, 372
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 86, 182
BshVI ATCGAT 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 134
BslI CCNNNNNNNGG 4 cut(s) 31, 240, 371, 372
BsmAI GTCTC 1 cut(s) 461
BsnI GGCC 2 cut(s) 86, 182
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 4 cut(s) 262, 273, 475, 479
Bsp19I CCATGG 1 cut(s) 186
Bsp68I TCGCGA 1 cut(s) 9
BspACI CCGC 2 cut(s) 183, 505
BspANI GGCC 2 cut(s) 86, 182
BspCNI CTCAG 1 cut(s) 373
BspDI ATCGAT 1 cut(s) 478
BspFNI CGCG 1 cut(s) 9
BspHI TCATGA 1 cut(s) 174
BspMI ACCTGC 3 cut(s) 160, 403, 430
BspPI GGATC 1 cut(s) 257
BspQI GCTCTTC 2 cut(s) 155, 348
BspTNI GGTCTC 1 cut(s) 461
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 81, 186
BssMI GATC 4 cut(s) 262, 273, 475, 479
BssT1I CCWWGG 2 cut(s) 81, 186
Bst4CI ACNGT 2 cut(s) 145, 322
Bst6I CTCTTC 2 cut(s) 155, 348
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 167, 440
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 449
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 4 cut(s) 265, 276, 478, 482
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 4 cut(s) 262, 273, 475, 479
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 442
BstUI CGCG 1 cut(s) 9
BstV2I GAAGAC 2 cut(s) 146, 237
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 478
BsuRI GGCC 2 cut(s) 86, 182
BsuTUI ATCGAT 1 cut(s) 478
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 150
BtuMI TCGCGA 1 cut(s) 9
BveI ACCTGC 3 cut(s) 160, 403, 430
Cac8I GCNNGC 2 cut(s) 167, 440
CciI TCATGA 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 478
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 5 cut(s) 175, 187, 307, 439, 515
CviJI RGCY 9 cut(s) 14, 35, 43, 86, 132, 182, 358, 380, 519
CviKI_1 RGCY 9 cut(s) 14, 35, 43, 86, 132, 182, 358, 380, 519
DdeI CTNAG 1 cut(s) 381
DpnI GATC 4 cut(s) 264, 275, 477, 481
DpnII GATC 4 cut(s) 262, 273, 475, 479
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 155, 348
EarI CTCTTC 2 cut(s) 155, 348
Ecl136II GAGCTC 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 81, 186
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 461
Eco52I CGGCCG 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 81, 186
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 2 cut(s) 81, 186
FaeI CATG 5 cut(s) 178, 190, 310, 442, 518
FaiI YATR 9 cut(s) 60, 176, 188, 308, 434, 440, 456, 503, 516
FatI CATG 5 cut(s) 174, 186, 306, 438, 514
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 436
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 523
HaeIII GGCC 2 cut(s) 86, 182
Hin1II CATG 5 cut(s) 178, 190, 310, 442, 518
HinfI GANTC 3 cut(s) 4, 220, 427
HphI GGTGA 1 cut(s) 427
Hpy188I TCNGA 2 cut(s) 219, 225
Hpy188III TCNNGA 2 cut(s) 8, 175
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 145, 322
HpyCH4V TGCA 1 cut(s) 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 1 cut(s) 381
Hsp92II CATG 5 cut(s) 178, 190, 310, 442, 518
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 4 cut(s) 262, 273, 475, 479
LguI GCTCTTC 2 cut(s) 155, 348
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 7 cut(s) 104, 155, 224, 226, 398, 435, 505
LweI GCATC 1 cut(s) 458
MalI GATC 4 cut(s) 264, 275, 477, 481
MboI GATC 4 cut(s) 262, 273, 475, 479
MboII GAAGA 7 cut(s) 45, 102, 148, 151, 172, 237, 365
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 179, 330
MnlI CCTC 5 cut(s) 188, 274, 276, 278, 322
MroXI GAANNNNTTC 2 cut(s) 206, 357
MseI TTAA 1 cut(s) 551
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 502
NcoI CCATGG 1 cut(s) 186
NdeII GATC 4 cut(s) 262, 273, 475, 479
NlaIII CATG 5 cut(s) 178, 190, 310, 442, 518
NruI TCGCGA 1 cut(s) 9
NspI RCATGY 1 cut(s) 442
PaeI GCATGC 1 cut(s) 442
PagI TCATGA 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 403
PciSI GCTCTTC 2 cut(s) 155, 348
PdmI GAANNNNTTC 2 cut(s) 206, 357
PfeI GAWTC 2 cut(s) 4, 427
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 519
PsuI RGATCY 1 cut(s) 262
RruI TCGCGA 1 cut(s) 9
SacI GAGCTC 1 cut(s) 134
SapI GCTCTTC 2 cut(s) 155, 348
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 4 cut(s) 262, 273, 475, 479
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 1 cut(s) 458
SphI GCATGC 1 cut(s) 442
SsiI CCGC 2 cut(s) 183, 505
SstI GAGCTC 1 cut(s) 134
StyI CCWWGG 2 cut(s) 81, 186
TaaI ACNGT 2 cut(s) 145, 322
TaqI TCGA 4 cut(s) 134, 248, 294, 478
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 2 cut(s) 4, 427
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 37, 87
TspRI CASTG 1 cut(s) 150
XceI RCATGY 1 cut(s) 442
XmnI GAANNNNTTC 2 cut(s) 206, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.