Rorug05G0237600

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001467
Physical Location & Seq
Reverse (-)
25018881 .. 25019481
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0237600.1

Sequence Viewer

Length: 558 bp
ATGGAGTTGGATAGACTTACCAAGTCATATCATGGAAATAATATTGTCATGCTTGCCAATGAAGGACGCAGTGAGGACAAGTCTATCAAGCCAGTGGAGTGTCGCTCAGCTCACAATGATACTACCTTTGCGGACATTGTTGATCATGTACTTTTAGCTCACATTGGCCCCATACACAAGTTCAAGCTTTTTCGAGCTCATTTAGCTAGTAAAGACATTGATCGATGGATTCTTCATGTATCAAGGAACTCTATCAAAGAATTCATACTTCACCATCAGGAGCAGCGATACAAGATTCCTTCATGTTTGTTTTCTTGTCAAGATATAATTAGTTTAGAGCTATCCAGCTATTTGATAGAACCTCCATCCACTTTCAAAGGGTTCAGGAGTTTGAAGAGCCTTGACTTTGAGAATGTTATCTTTTCCCAAGATGTGTTCGAACACCTGATTATTTCCTGTCCTTTGCTTGAGAGTTTGACATTGGTCAGCCATCTCATGATTGACGCACCAAATCTCAAATTCCTTGATGGGGAGTGCAAATTTCACCCCTCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

185

Amino Acids

21.28

Weight (kDa)

6.29

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 68 - 163 1.2e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 73 - 164 1.3e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AcsI RAATTY 3 cut(s) 260, 518, 539
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 3 cut(s) 184, 376, 394
AluBI AGCT 7 cut(s) 110, 158, 187, 197, 206, 340, 348
AluI AGCT 7 cut(s) 110, 158, 187, 197, 206, 340, 348
Alw21I GWGCWC 1 cut(s) 199
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 3 cut(s) 260, 518, 539
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 263, 536
AsuII TTCGAA 1 cut(s) 438
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 295
BccI CCATC 5 cut(s) 219, 282, 373, 498, 521
BclI TGATCA 1 cut(s) 142
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 284
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 482
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu1102I GCTNAGC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 488
Bsa29I ATCGAT 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 92
BseCI ATCGAT 1 cut(s) 223
BseGI GGATG 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 529
BsnI GGCC 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 142, 220
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 119
BspDI ATCGAT 1 cut(s) 223
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 438
BsrI ACTGG 1 cut(s) 92
BssMI GATC 2 cut(s) 142, 220
Bst6I CTCTTC 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 2 cut(s) 145, 223
BstMBI GATC 2 cut(s) 142, 220
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstPAI GACNNNNGTC 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 223
BsuRI GGCC 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 223
BtsCI GGATG 1 cut(s) 365
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 76, 99
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 167
ClaI ATCGAT 1 cut(s) 223
CseI GACGC 2 cut(s) 75, 512
Csp6I GTAC 1 cut(s) 149
CviAII CATG 6 cut(s) 32, 49, 146, 236, 303, 496
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 106
DpnI GATC 2 cut(s) 144, 222
DpnII GATC 2 cut(s) 142, 220
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Ecl136II GAGCTC 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 6 cut(s) 35, 52, 149, 239, 306, 499
FatI CATG 6 cut(s) 31, 48, 145, 235, 302, 495
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 168
HgaI GACGC 2 cut(s) 75, 512
Hin1II CATG 6 cut(s) 35, 52, 149, 239, 306, 499
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 229, 295
HphI GGTGA 2 cut(s) 263, 536
Hpy188III TCNNGA 4 cut(s) 278, 320, 385, 496
HpyAV CCTTC 2 cut(s) 56, 309
HpyCH4V TGCA 1 cut(s) 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 6 cut(s) 35, 52, 149, 239, 306, 499
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 142, 220
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 6 cut(s) 105, 263, 358, 370, 458, 469
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 1 cut(s) 207
MalI GATC 2 cut(s) 144, 222
MboI GATC 2 cut(s) 142, 220
MboII GAAGA 2 cut(s) 224, 406
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 5 cut(s) 260, 327, 518, 539, 553
MnlI CCTC 2 cut(s) 67, 372
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 2 cut(s) 142, 220
NlaIII CATG 6 cut(s) 35, 52, 149, 239, 306, 499
NlaIV GGNNCC 1 cut(s) 169
NspV TTCGAA 1 cut(s) 438
PagI TCATGA 1 cut(s) 495
PciSI GCTCTTC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 229, 295
PkrI GCNGC 1 cut(s) 285
PshAI GACNNNNGTC 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 167
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SacI GAGCTC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 389
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 2 cut(s) 142, 220
Sau96I GGNCC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 5 cut(s) 260, 327, 518, 539, 553
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 199
TaqI TCGA 3 cut(s) 193, 223, 438
TasI AATT 5 cut(s) 260, 327, 518, 539, 553
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 2 cut(s) 229, 295
TscAI CASTG 2 cut(s) 76, 99
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 75, 224, 253, 291
TspRI CASTG 2 cut(s) 76, 99
XapI RAATTY 3 cut(s) 260, 518, 539
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.