Rh5DG264100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
31734205 .. 31735216
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG264100.1

Sequence Viewer

Length: 291 bp
ATGACCGAGCAAGGCAAACGCATATATGAGAATTACTCGTTGCCTGAGGATTTGACAGCTCAAGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCTGCAGGGGAGATTAATTGTAGTTTCTTTTTCCGTGTTTGCTTGTATTGGCTATTATTACCGAGCTGGTTGTTTAAAAATCACCAGATTTATACTATTCTGGCTACATTTCAGATTTTCAAGGGTTACAACCGATTTGTCGGAAGAGCAGCCCTTATCAATTGTGTAAACACTGCGATAGTCCTTCTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.01

Weight (kDa)

8.88

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 70
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 4 cut(s) 59, 77, 98, 162
AluI AGCT 4 cut(s) 59, 77, 98, 162
ApeKI GCWGC 3 cut(s) 77, 98, 245
AseI ATTAAT 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 45
BbvI GCAGC 3 cut(s) 64, 85, 257
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 3 cut(s) 78, 99, 246
BlsI GCNGC 3 cut(s) 79, 100, 247
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpuEI CTTGAG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 64, 85, 257
BsgI GTGCAG 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 103
BspQI GCTCTTC 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 64, 85, 257
Bsu36I CCTNAGG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Csp6I GTAC 1 cut(s) 69
CviJI RGCY 7 cut(s) 59, 77, 98, 148, 162, 200, 248
CviKI_1 RGCY 7 cut(s) 59, 77, 98, 148, 162, 200, 248
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 45
DraI TTTAAA 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaiI YATR 5 cut(s) 23, 25, 27, 189, 289
Fnu4HI GCNGC 3 cut(s) 78, 99, 246
Fsp4HI GCNGC 3 cut(s) 78, 99, 246
GluI GCNGC 3 cut(s) 78, 99, 246
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 210, 239, 285
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 3 cut(s) 59, 85, 290
HpyCH4V TGCA 2 cut(s) 80, 101
HpyF3I CTNAG 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 5 cut(s) 57, 87, 148, 182, 194
Lsp1109I GCAGC 3 cut(s) 64, 85, 257
MaeIII GTNAC 1 cut(s) 221
MboII GAAGA 2 cut(s) 100, 252
MfeI CAATTG 1 cut(s) 256
MluCI AATT 3 cut(s) 31, 112, 256
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 1 cut(s) 40
MseI TTAA 2 cut(s) 111, 171
MunI CAATTG 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 79, 100, 247
PshBI ATTAAT 1 cut(s) 111
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 111, 171
SatI GCNGC 3 cut(s) 78, 99, 246
SetI ASST 5 cut(s) 61, 70, 79, 100, 164
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 3 cut(s) 31, 112, 256
StyI CCWWGG 1 cut(s) 83
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 31, 112, 256
Tru1I TTAA 2 cut(s) 111, 171
Tru9I TTAA 2 cut(s) 111, 171
TscAI CASTG 1 cut(s) 274
TseI GCWGC 3 cut(s) 77, 98, 245
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 274
VspI ATTAAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.