Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001467

Physical Location & Seq

Genomic Coordinates Reverse (-)

26574244 .. 26583925

Gene Structure 9682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAACCAAGGCCACCCAGTGTTCATCAGTTGATTCTTCTATGACGTCGTTTGGGAGCTCGAAGAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAAAGAGGCTGGAACACCTTCCTGTTTCAGAAAACGGAGCAAGGAATATTTCAGCAGGTTTTAAAAGGCGAACTCGATTTCATATCAGAACCTTGTCCCAGCATATCTGAAAGTGCCAAGGATTTGGTCAGGAGAATGCTTGTGAGGGACCCAAAAAAGCGGATAATAGCCATGAAGTACTTCCCTCGCAAACGCATATATGAGAATTACTCGTTGCCTGAGGATTTGACAGCTCAAGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCTGCAGGGGAGTGGGCTTGTTGTGGCATCTCTTACAGAGTGGCATCTTCCAGAGAAATACTGGACGAGGAAGAGCAAACCAAGGAATGGTCTCTGATAATGATTCTGGAAATGAGTCCGATGAACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

172

Amino Acids

19.67

Weight (kDa)

7.59

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQS	PF01959	22 - 59	4.9e-06	3-dehydroquinate synthase II N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49050
malus_domestica	MD00G1026200.v1.1 MD00G1027200.v1.1 MD00G1027300.v1.1 MD02G1040400.v1.1 MD02G1040800.v1.1 MD02G1041100.v1.1 MD02G1041500.v1.1 MD02G1041600.v1.1 MD11G1046200.v1.1 MD15G1234700.v1.1
pyrus_communis	pycom02g03190 pycom02g03430 pycom02g03440 pycom09g10760 pycom09g12970
rosa_chinensis	RchiOBHm_Chr1g0367931
rosa_laevigata	RLG00000009858 RLG00000017790 RLG00000029248 RLG00000036011
rosa_multiflora	Rmu_sc0000243.1_g000024 Rmu_sc0007790.1_g000006 Rmu_sc0012870.1_g000004
rosa_roxburghii	Rroxscaffold_1G00037580 Rroxscaffold_1G00038180 Rroxscaffold_1G00049490 Rroxscaffold_2G00089170 Rroxscaffold_2G00095040 Rroxscaffold_2G00127190 Rroxscaffold_3G00227090 Rroxscaffold_4G00301620
rosa_rugosa	Rorug02G0254800 Rorug03G0325900 Rorug05G0157000 Rorug05G0237600
rosa_samantha	Rh1BG165600 Rh1BG241700 Rh1DG196200 Rh1DG270500 Rh2BG468700 Rh2CG265400 Rh2CG401400 Rh3CG316000 Rh3DG350500 Rh4BG102900 Rh4DG196700 Rh5CG562400 Rh5DG264100 Rh7DG148300 Rh7DG240400
rosa_wichuraiana	Rw5G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
Acc36I	ACCTGC	2 cut(s)	88, 163
AccB7I	CCANNNNNTGG	1 cut(s)	474
AciI	CCGC	2 cut(s)	111, 277
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	2 cut(s)	296, 361
AfiI	CCNNNNNNNGG	1 cut(s)	474
AluBI	AGCT	4 cut(s)	60, 350, 368, 389
AluI	AGCT	4 cut(s)	60, 350, 368, 389
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	483
AoxI	GGCC	2 cut(s)	12, 108
ApeKI	GCWGC	2 cut(s)	368, 389
Asp700I	GAANNNNTTC	2 cut(s)	134, 296
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	355, 376
BceAI	ACGGC	2 cut(s)	98, 123
BcoDI	GTCTC	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	2 cut(s)	88, 163
BisI	GCNGC	3 cut(s)	111, 369, 390
BlsI	GCNGC	3 cut(s)	112, 370, 391
BmcAI	AGTACT	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	266, 267
BmrI	ACTGGG	1 cut(s)	13
BmsI	GCATC	2 cut(s)	423, 440
BmuI	ACTGGG	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpuEI	CTTGAG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	5 cut(s)	9, 114, 234, 374, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	2 cut(s)	19, 453
Bse21I	CCTNAGG	1 cut(s)	336
BseDI	CCNNGG	5 cut(s)	9, 114, 234, 374, 468
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	19, 453
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	355, 376
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	14, 110
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	198, 278
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	483
BsmFI	GGGAC	2 cut(s)	198, 278
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	14, 110
Bso31I	GGTCTC	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	62
BspACI	CCGC	2 cut(s)	111, 277
BspANI	GGCC	2 cut(s)	14, 110
BspCNI	CTCAG	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	266, 267
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	2 cut(s)	88, 163
BspQI	GCTCTTC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	19, 453
BssECI	CCNNGG	5 cut(s)	9, 114, 234, 374, 468
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	4 cut(s)	9, 234, 374, 468
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	483
BstMCI	CGRYCG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	355, 376
BstV2I	GAAGAC	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	14, 110
BtgI	CCRYGG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	26
BveI	ACCTGC	2 cut(s)	88, 163
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	295, 360
CviAII	CATG	2 cut(s)	103, 289
CviJI	RGCY	9 cut(s)	14, 60, 110, 126, 287, 350, 368, 389, 404
CviKI_1	RGCY	9 cut(s)	14, 60, 110, 126, 287, 350, 368, 389, 404
CviQI	GTAC	2 cut(s)	295, 360
DdeI	CTNAG	1 cut(s)	336
DraI	TTTAAA	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	4 cut(s)	9, 234, 374, 468
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	265
EcoT14I	CCWWGG	4 cut(s)	9, 234, 374, 468
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	4 cut(s)	9, 234, 374, 468
FaeI	CATG	2 cut(s)	106, 292
FaiI	YATR	8 cut(s)	44, 104, 200, 221, 290, 314, 316, 318
FaqI	GGGAC	2 cut(s)	198, 278
FatI	CATG	2 cut(s)	102, 288
Fnu4HI	GCNGC	3 cut(s)	111, 369, 390
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	111, 369, 390
GluI	GCNGC	3 cut(s)	111, 369, 390
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	14, 110
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	106, 292
HinfI	GANTC	3 cut(s)	35, 490, 502
Hpy188I	TCNGA	5 cut(s)	147, 205, 226, 483, 507
Hpy188III	TCNNGA	5 cut(s)	103, 247, 353, 438, 494
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	145, 350, 376
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	371, 392
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	106, 292
KflI	GGGWCCC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	3 cut(s)	57, 154, 386
Lsp1109I	GCAGC	2 cut(s)	355, 376
LweI	GCATC	2 cut(s)	423, 440
MaeII	ACGT	1 cut(s)	47
MboII	GAAGA	6 cut(s)	30, 76, 79, 391, 426, 470
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	5 cut(s)	116, 255, 312, 331, 448
MroXI	GAANNNNTTC	2 cut(s)	134, 296
MseI	TTAA	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	106, 292
NlaIV	GGNNCC	2 cut(s)	266, 267
PagI	TCATGA	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	134, 296
PfeI	GAWTC	2 cut(s)	35, 490
PflMI	CCANNNNNTGG	1 cut(s)	474
PkrI	GCNGC	3 cut(s)	112, 370, 391
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	266, 267
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	296, 361
RsaNI	GTAC	2 cut(s)	295, 360
SacI	GAGCTC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	111, 369, 390
Sau96I	GGNCC	1 cut(s)	265
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	2 cut(s)	423, 440
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	322
SsiI	CCGC	2 cut(s)	111, 277
SspI	AATATT	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	62
StyI	CCWWGG	4 cut(s)	9, 234, 374, 468
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	62, 192
TasI	AATT	1 cut(s)	322
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	35, 490
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	2 cut(s)	368, 389
TspDTI	ATGAA	3 cut(s)	15, 187, 305
TspGWI	ACGGA	2 cut(s)	101, 167
TspRI	CASTG	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmnI	GAANNNNTTC	2 cut(s)	134, 296
ZraI	GACGTC	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.