Rorug05G0157000

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001467
Physical Location & Seq
Reverse (-)
14639059 .. 14647608
8550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0157000.1

Sequence Viewer

Length: 492 bp
ATGTTTAAGTTCTTGCATCTCTCTCCTTTGCGACATAGTGCTCCCAAGTTTACTAGAGTTACTTGGATGCCTCCACCGGCCCCTTGGATAAAGATTAATATTGATGGGTCTTTCAAAAATCGGGACCAAGCAGGCTTTGGAGGCATAGCACGGGATAATGATGGTTCCTTTGTTCTTGCTTTTGCCTCAAGAGTGTGTGTCCCAAGTGCTCTGGATGCCGAAGTGTTGGCCTTTATTGAGGCTATCAGGGTGGCCAAACTGAATGAGTGGCATTACCTGTGGGTCGAAACGGACTCGGCCTTGGTCTTGAAAGTTTCACGAGCTAAGGAGCTGAAGAAACATGAGCTGAAGGAGAAAGATGCTTCTGGTTCAGAGGAGGAAGGGGACTTTGCCTGGTACCAAGCCAATTGCTGCAGTACCCCGTTGGGAGAGGCCGGCCGTGATTATCGAAAGTGCGTATACATATGGGGAGCTCGAGGAGGAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

163

Amino Acids

18.25

Weight (kDa)

7.68

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 33 - 113 1.2e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 459
AcoI YGGCCR 2 cut(s) 252, 436
AcuI CTGAAG 2 cut(s) 353, 368
AfaI GTAC 2 cut(s) 398, 418
AgsI TTSAA 2 cut(s) 115, 310
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 4 cut(s) 323, 331, 346, 473
AluI AGCT 4 cut(s) 323, 331, 346, 473
Alw21I GWGCWC 3 cut(s) 43, 211, 475
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 6 cut(s) 78, 228, 252, 297, 432, 436
ApeKI GCWGC 1 cut(s) 411
AseI ATTAAT 1 cut(s) 96
Asp718I GGTACC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 79, 124
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 1 cut(s) 124
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 475
BauI CACGAG 1 cut(s) 318
Bbv12I GWGCWC 3 cut(s) 43, 211, 475
BbvI GCAGC 1 cut(s) 398
BccI CCATC 2 cut(s) 98, 155
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 394
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 412
BisI GCNGC 1 cut(s) 412
BlsI GCNGC 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 79, 124
BmiI GGNNCC 4 cut(s) 81, 125, 166, 398
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 4 cut(s) 25, 57, 205, 349
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 83, 300
Bse118I RCCGGY 2 cut(s) 76, 434
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 2 cut(s) 83, 300
BseGI GGATG 2 cut(s) 72, 220
BseRI GAGGAG 2 cut(s) 389, 492
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 6 cut(s) 80, 230, 254, 299, 434, 438
BshNI GGYRCC 1 cut(s) 396
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 3 cut(s) 43, 211, 475
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 2 cut(s) 77, 435
BslFI GGGAC 3 cut(s) 137, 185, 398
BsmFI GGGAC 3 cut(s) 137, 185, 398
BsnI GGCC 6 cut(s) 80, 230, 254, 299, 434, 438
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 3 cut(s) 43, 211, 475
BspANI GGCC 6 cut(s) 80, 230, 254, 299, 434, 438
BspLI GGNNCC 4 cut(s) 81, 125, 166, 398
BspMAI CTGCAG 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 396
BsrFI RCCGGY 2 cut(s) 76, 434
BssAI RCCGGY 2 cut(s) 76, 434
BssECI CCNNGG 2 cut(s) 83, 300
BssNAI GTATAC 1 cut(s) 460
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 2 cut(s) 83, 300
Bst1107I GTATAC 1 cut(s) 460
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 394
BstC8I GCNNGC 2 cut(s) 133, 436
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 72, 220
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 141, 215
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 398
BstZ17I GTATAC 1 cut(s) 460
BstZI CGGCCG 1 cut(s) 436
BsuRI GGCC 6 cut(s) 80, 230, 254, 299, 434, 438
BtsCI GGATG 2 cut(s) 72, 220
Cac8I GCNNGC 2 cut(s) 133, 436
Cfr10I RCCGGY 2 cut(s) 76, 434
Cfr13I GGNCC 2 cut(s) 79, 124
Csp6I GTAC 2 cut(s) 397, 417
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 397, 417
DdeI CTNAG 1 cut(s) 324
EaeI YGGCCR 2 cut(s) 252, 436
EagI CGGCCG 1 cut(s) 436
Ecl136II GAGCTC 1 cut(s) 473
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 83, 300
Eco24I GRGCYC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 2 cut(s) 353, 368
Eco88I CYCGRG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 392
EcoT14I CCWWGG 2 cut(s) 83, 300
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 2 cut(s) 83, 300
FaeI CATG 1 cut(s) 344
FaiI YATR 6 cut(s) 36, 146, 342, 460, 464, 466
FaqI GGGAC 3 cut(s) 137, 185, 398
FatI CATG 1 cut(s) 340
FauNDI CATATG 1 cut(s) 464
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 412
FokI GGATG 2 cut(s) 79, 227
FriOI GRGCYC 1 cut(s) 475
FseI GGCCGGCC 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 412
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 412
HaeIII GGCC 6 cut(s) 80, 230, 254, 299, 434, 438
HapII CCGG 2 cut(s) 77, 435
Hin1II CATG 1 cut(s) 344
HinfI GANTC 1 cut(s) 293
HpaII CCGG 2 cut(s) 77, 435
Hpy166II GTNNAC 2 cut(s) 51, 460
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 5 cut(s) 122, 189, 212, 307, 318
Hpy8I GTNNAC 2 cut(s) 51, 460
HpyAV CCTTC 2 cut(s) 343, 374
HpyCH4V TGCA 2 cut(s) 16, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 215
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 1 cut(s) 344
KpnI GGTACC 1 cut(s) 400
KroI GCCGGC 1 cut(s) 434
KroNI GCCGGC 1 cut(s) 436
LmnI GCTCC 3 cut(s) 46, 328, 470
LpnPI CCDG 9 cut(s) 90, 117, 197, 232, 290, 351, 379, 406, 448
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 4 cut(s) 25, 57, 205, 349
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 58
MboII GAAGA 1 cut(s) 346
MfeI CAATTG 1 cut(s) 406
MhlI GDGCHC 3 cut(s) 43, 211, 475
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 406
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 434
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 6, 96
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 2 cut(s) 77, 435
MspR9I CCNGG 1 cut(s) 394
MunI CAATTG 1 cut(s) 406
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 141, 215
NaeI GCCGGC 1 cut(s) 436
NdeI CATATG 1 cut(s) 464
NgoMIV GCCGGC 1 cut(s) 434
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 4 cut(s) 81, 125, 166, 398
NmeAIII GCCGAG 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 474
PdiI GCCGGC 1 cut(s) 436
PkrI GCNGC 1 cut(s) 413
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PshBI ATTAAT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 4 cut(s) 81, 125, 166, 398
PspPI GGNCC 2 cut(s) 79, 124
PspXI VCTCGAGB 1 cut(s) 474
PstI CTGCAG 1 cut(s) 416
RigI GGCCGGCC 1 cut(s) 438
RsaI GTAC 2 cut(s) 398, 418
RsaNI GTAC 2 cut(s) 397, 417
SacI GAGCTC 1 cut(s) 475
SaqAI TTAA 2 cut(s) 6, 96
SatI GCNGC 1 cut(s) 412
Sau96I GGNCC 2 cut(s) 79, 124
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 3 cut(s) 43, 211, 475
SetI ASST 5 cut(s) 279, 325, 333, 348, 475
SfaNI GCATC 4 cut(s) 25, 57, 205, 349
SfcI CTRYAG 1 cut(s) 412
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 187, 474
SmoI CTYRAG 2 cut(s) 187, 474
Sse9I AATT 1 cut(s) 406
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 2 cut(s) 83, 300
TaqI TCGA 3 cut(s) 285, 448, 475
TasI AATT 1 cut(s) 406
Tru1I TTAA 2 cut(s) 6, 96
Tru9I TTAA 2 cut(s) 6, 96
TseI GCWGC 1 cut(s) 411
TspGWI ACGGA 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 2 cut(s) 81, 134
XhoI CTCGAG 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.