Rroxscaffold_2G00089170

3-dehydroquinate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001467
Physical Location & Seq
Forward (+)
11075939 .. 11077873
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089170.1

Sequence Viewer

Length: 378 bp
ATGATTCGAGAAGCCAATGGTGGCCCCAACAAGGCTAACAAGCCGTTCATGCGCTCCTCATCGAGCAACCCCAATAAATGCCACCCGAGTTCATCGGTTGCTTCTTCTACGACGTCGTTTGGGAGCTCGAAGAAGATGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCCGTGGAGAGAGGCTGGAATACCTTCTGTTTCAAAGTCGAAACTCGCCGATGACTGGTCTTGCAGGTGAGCTTATGAAATTTGAGTACCAAAAGAAGGTCGCCTCGCTGAGCAAGCTAAAGAAATGTAGTACTAACTCGGGGAGCATTGGAGAAATCAAGAGCAGCAGTGAGTCATCTGCATATAAGATACATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHQS

Protein Analysis

125

Amino Acids

13.65

Weight (kDa)

9.96

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
AatII GACGTC 1 cut(s) 116
Acc36I ACCTGC 2 cut(s) 154, 233
AciI CCGC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 2 cut(s) 266, 310
AfiI CCNNNNNNNGG 3 cut(s) 31, 233, 274
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 3 cut(s) 126, 250, 295
AluI AGCT 3 cut(s) 126, 250, 295
Alw21I GWGCWC 1 cut(s) 128
Ama87I CYCGRG 2 cut(s) 85, 316
AoxI GGCC 2 cut(s) 22, 174
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 2 cut(s) 85, 316
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 130
BceAI ACGGC 2 cut(s) 28, 189
BfuAI ACCTGC 2 cut(s) 154, 233
BisI GCNGC 2 cut(s) 177, 343
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 2 cut(s) 178, 344
BmcAI AGTACT 1 cut(s) 310
BmeT110I CYCGRG 2 cut(s) 85, 316
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 233, 274
Bse1I ACTGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 3 cut(s) 31, 233, 274
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 46
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 24, 176
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 2 cut(s) 85, 316
BslI CCNNNNNNNGG 3 cut(s) 31, 233, 274
BsnI GGCC 2 cut(s) 24, 176
BsoBI CYCGRG 2 cut(s) 85, 316
Bsp1286I GDGCHC 1 cut(s) 128
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 24, 176
BspCNI CTCAG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 25
BspMI ACCTGC 2 cut(s) 154, 233
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 161, 293
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 54
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 49, 292
BstV1I GCAGC 1 cut(s) 354
BstZI CGGCCG 1 cut(s) 174
BsuRI GGCC 2 cut(s) 24, 176
BtgI CCRYGG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 352
BveI ACCTGC 2 cut(s) 154, 233
Cac8I GCNNGC 2 cut(s) 161, 293
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 265, 309
CviAII CATG 2 cut(s) 49, 169
CviJI RGCY 9 cut(s) 14, 24, 35, 43, 126, 176, 193, 250, 295
CviKI_1 RGCY 9 cut(s) 14, 24, 35, 43, 126, 176, 193, 250, 295
CviQI GTAC 2 cut(s) 265, 309
DdeI CTNAG 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 174
EagI CGGCCG 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 128
Eco52I CGGCCG 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 126
Eco88I CYCGRG 2 cut(s) 85, 316
EcoICRI GAGCTC 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 2 cut(s) 52, 172
FaiI YATR 6 cut(s) 50, 170, 254, 361, 363, 372
FatI CATG 2 cut(s) 48, 168
Fnu4HI GCNGC 2 cut(s) 177, 343
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 177, 343
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 177, 343
HaeIII GGCC 2 cut(s) 24, 176
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 2 cut(s) 52, 172
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 4, 350
HphI GGTGA 1 cut(s) 257
Hpy188III TCNNGA 3 cut(s) 8, 169, 337
Hpy99I CGWCG 2 cut(s) 115, 118
HpyAV CCTTC 2 cut(s) 212, 268
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 242, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 292
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 52, 172
HspAI GCGC 1 cut(s) 52
LmnI GCTCC 3 cut(s) 59, 123, 321
LpnPI CCDG 4 cut(s) 149, 179, 219, 228
Lsp1109I GCAGC 1 cut(s) 354
MaeII ACGT 1 cut(s) 113
MboII GAAGA 3 cut(s) 96, 142, 145
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 257
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 3 cut(s) 67, 183, 292
MroXI GAANNNNTTC 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 49, 292
NlaIII CATG 2 cut(s) 52, 172
NlaIV GGNNCC 1 cut(s) 25
PagI TCATGA 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 178, 344
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 2 cut(s) 266, 310
RsaNI GTAC 2 cut(s) 265, 309
SacI GAGCTC 1 cut(s) 128
SatI GCNGC 2 cut(s) 177, 343
Sau96I GGNCC 1 cut(s) 23
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 359
SduI GDGCHC 1 cut(s) 128
SetI ASST 8 cut(s) 116, 128, 168, 204, 247, 252, 279, 297
Sse9I AATT 1 cut(s) 257
SsiI CCGC 1 cut(s) 177
SstI GAGCTC 1 cut(s) 128
TaiI ACGT 1 cut(s) 116
TaqI TCGA 4 cut(s) 7, 62, 128, 217
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 352
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 3 cut(s) 37, 81, 269
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 352
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 201
ZraI GACGTC 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.